PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539163.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 736aa    MW: 81244.6 Da    PI: 5.9821
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539163.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.42.6e-181181833099
                        ..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  30 keesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  KN539163.1_FGP009 118 PA--QELIAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNNQLLLGIRRA 183
                        33..48999*********************************************..7777778***9997 PP
2Auxin_resp118.45.6e-39208291183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld  rWpnS+Wrs+k
  KN539163.1_FGP009 208 AAHAASTNSRFTIFYNPRASPSEFVIPLSKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDAARWPNSHWRSVK 291
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.4E-11101184IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-27111197IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-26111211IPR015300DNA-binding pseudobarrel domain
PfamPF023623.1E-16117183IPR003340B3 DNA binding domain
CDDcd100172.28E-13120182No hitNo description
PROSITE profilePS5086311.321121184IPR003340B3 DNA binding domain
PfamPF065073.2E-34208291IPR010525Auxin response factor
SuperFamilySSF542771.63E-7602681No hitNo description
PfamPF023092.0E-8602690IPR033389AUX/IAA domain
PROSITE profilePS5174523.1605689IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MRLSSSSGSV LPAQAASPEA VEEQKCLNSE LWHACAGPLV SLPAVGSRVV YFPQGHSEQV  60
AASTNKEMES QIPNYPNLPP QLICQLHNVT MHADAETDEV YAQMTLQPLS PDFTQQPPAQ  120
ELIAKDLHGN EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVLFIW NDNNQLLLGI  180
RRANRPQTVM PSSVLSSDSM HIGLLAAAAH AASTNSRFTI FYNPRASPSE FVIPLSKYVK  240
AVYHTRISVG MRFRMLFETE ESSVRRYMGT ITGISDLDAA RWPNSHWRSV KVGWDESTAG  300
ERQPRVSLWE IEPLTTFPMY PSPFPLRLKR PWPTGLPSLH GGKDDDLTSS LMWLRDSANP  360
GFQSLNFGGL GMNPWMQPRF DASLLGLQPD MYQTIAATAF QDPTKQSSPM TLQTVLPFSR  420
PQSYPDTSMS SLSPSNTSTM HNALRPFSSE APSHLSMPRP TAVPVPDPWS SKRVAVESLL  480
PSRPQVTSQM EQLDSTAPSI PQSSVLAPLP GRGCLVDQDG NSDPQNHLLF GVNIDSQSLL  540
MQGGIPSLQG ENDSTAIPYS TSNFLSPSQN DFPLDQTLCS ADCLDESGYV PCSQNSDQVI  600
NRPPATFVKV YKSGTYGRSL DITRFSSYHE LRRELGRLFG LEGQLENPLR SGWQLVFVDR  660
EDDVLLVGDD PWQEFVNSVS CIKILSPQEV QQMGKPFELL SSAPGKRLGS SCDDYVSRQE  720
SRSLSTGIAS VGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1152731251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539163.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1032800.0AK103280.1 Oryza sativa Japonica Group cDNA clone:J033124L19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010540603.10.0PREDICTED: auxin response factor 6-like isoform X2
SwissprotA2YG670.0ARFQ_ORYSI; Auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A0B0NBW50.0A0A0B0NBW5_GOSAR; Auxin response factor
STRINGGSMUA_Achr5P26580_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]