PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539167.1_FGP010
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 503aa    MW: 54755.3 Da    PI: 4.571
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539167.1_FGP010genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.54.9e-201691787
           trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                       m+ ++r++ lk+p Wee s++++e g++rs k+Ckek+en+ k+yk++keg+ +r++++s  +++f+qlea
  KN539167.1_FGP010  1 MDAAFRNATLKAPVWEELSRRLAELGYQRSGKKCKEKFENVDKYYKRTKEGRTGRQDGKS--YRFFSQLEA 69
                       67899*************************************************866665..*******85 PP
2trihelix108.44.5e-34267352187
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                        rW+k+ev+aLi++r e+ee++++   k+plWee+++ m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf+ql+a
  KN539167.1_FGP010 267 RWPKEEVQALIDLRMEKEEQYNDMGPKGPLWEEIAAGMQRIGYNRSAKRCKEKWENINKYFKKVKESNKRR-PEDSKTCPYFHQLDA 352
                        8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122032.16E-14149No hitNo description
PfamPF138371.4E-14370No hitNo description
PROSITE profilePS500904.8441542IPR017877Myb-like domain
SMARTSM007171.0E-5264326IPR001005SANT/Myb domain
CDDcd122031.52E-24266331No hitNo description
PROSITE profilePS500907.851266324IPR017877Myb-like domain
SuperFamilySSF466896.8E-5266334IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.7E-5266323IPR009057Homeodomain-like
PfamPF138371.8E-22267353No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MDAAFRNATL KAPVWEELSR RLAELGYQRS GKKCKEKFEN VDKYYKRTKE GRTGRQDGKS  60
YRFFSQLEAL HAAAPPPPPQ QQQRQGMPVE DPQPLAMARM MLPGAADLGF LSMSSESESD  120
DESDEEEEEE EEEAVAPGGG GPEGLGDDGD GDGEGGSSTR KLMAMFEGMM RQVTEKQDAM  180
QRVFLETLEK WEAERTEREE AWRRKEVARI NREREQLSKE RAAAASRDAA LIAFLQRVGG  240
GAGGEPAEDA WAAAAGGDGS GTTAPSRWPK EEVQALIDLR MEKEEQYNDM GPKGPLWEEI  300
AAGMQRIGYN RSAKRCKEKW ENINKYFKKV KESNKRRPED SKTCPYFHQL DAIYRKKHFA  360
GRGGGEGGGG VTIAASHSSL AIVTVSEQDN PSQRELEGKS SNDVGNVQLA VPLLVHNAPD  420
KKVEGSEGEP NVTAAAEETD SDEMGGDDYT DDGDDDDKMQ YKIEFQKPTA GGGGGGGEAP  480
APATTAAATS SAPASNASFL AVQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539167.1_FGP010
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1117420.0AK111742.1 Oryza sativa Japonica Group cDNA clone:J023050K14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622654.10.0trihelix transcription factor GTL1 isoform X2
RefseqXP_025878531.10.0trihelix transcription factor GTL1 isoform X2
SwissprotQ391171e-103TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A0D9YVP00.0A0A0D9YVP0_9ORYZ; Uncharacterized protein
STRINGOGLUM02G26410.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-44Trihelix family protein