PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539170.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 174aa    MW: 20179.8 Da    PI: 7.4599
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539170.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR413.9e-13543240
                TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                       ++++C+C ks+C+k+YC Cf+a  +Cs++C+C++CkN+e
  KN539170.1_FGP009  5 QHRSCRCVKSNCVKLYCPCFSAYGYCSQNCHCTNCKNRE 43
                       6789*********************************87 PP
2TCR33.86.6e-1195130439
                TCR   4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                        +gC+C+kskCl   CeC ++++ C+++C+C dC N 
  KN539170.1_FGP009  95 NGCRCQKSKCLVHSCECLKHEVRCTSKCQCIDCGNG 130
                        79*******************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.7E-10445IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163427.8735132IPR005172CRC domain
PfamPF036382.3E-10743IPR005172CRC domain
SMARTSM011143.2E-492133IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.9E-895129IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MSNDQHRSCR CVKSNCVKLY CPCFSAYGYC SQNCHCTNCK NREYYEDFVE ERVDMIKMKN  60
PRAFDPKIVR VQDASEIEPH SSNAVPENEQ WMYANGCRCQ KSKCLVHSCE CLKHEVRCTS  120
KCQCIDCGNG PRTKYDSNIG KDQSDVSGLT YEEPTMDTMQ SEHTLYPNKR PKYF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539170.1_FGP009
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7315891e-102AL731589.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19, complete sequence.
GenBankAP0149601e-102AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633502.18e-58protein tesmin/TSO1-like CXC 4
RefseqXP_025880815.18e-58protein tesmin/TSO1-like CXC 4
TrEMBLA0A0E0DAU41e-110A0A0E0DAU4_9ORYZ; Uncharacterized protein
STRINGOMERI04G02540.21e-113(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122672336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04850.18e-24Tesmin/TSO1-like CXC domain-containing protein