PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539176.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 251aa    MW: 28095.7 Da    PI: 5.6468
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539176.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.82.5e-273181151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krie+   rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  KN539176.1_FGP007 31 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFAS 81
                       79*********************************************9986 PP
2K-box56.41.3e-191121931899
              K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        + ++a L++++ +    +R++ Ge+Le Ls+ eLqqLe++Le +l ++  +K++ ++eqi+elq+k  +l een++Lr+++ 
  KN539176.1_FGP007 112 HSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQLAEENMQLRNQVS 193
                        334555555555555889************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR004046.7E-232545IPR002100Transcription factor, MADS-box
SMARTSM004323.5E-312682IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-292996IPR002100Transcription factor, MADS-box
CDDcd002656.01E-392997No hitNo description
PROSITE profilePS5006626.1562983IPR002100Transcription factor, MADS-box
PfamPF003192.0E-253279IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-234560IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-236081IPR002100Transcription factor, MADS-box
PROSITE profilePS5129714.082108198IPR002487Transcription factor, K-box
PfamPF014861.7E-17114192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009266Biological Processresponse to temperature stimulus
GO:0009910Biological Processnegative regulation of flower development
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0030154Biological Processcell differentiation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048438Biological Processfloral whorl development
GO:0005634Cellular Componentnucleus
GO:0000900Molecular Functiontranslation repressor activity, nucleic acid binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MPLPTIAPQP PHRLAASPFI LRFFFGLREI KRIESAAARQ VTFSKRRRGL FKKAEELSVL  60
CDADVALIVF SSTGKLSHFA SSSMNEIIDK YNTHSNNLGK AEQPSLDLNL EHSKYAHLNE  120
QLAEASLRLR QMRGEELEGL SIDELQQLEK NLEAGLHRVM LTKDQQFMEQ ISELQRKSSQ  180
LAEENMQLRN QVSQISPAEK QVVDTENFVT EEGQSSESVM TALHSGSSQS QDNDDGSDVS  240
LKLGLPCGAW K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-172995773MEF2C
5f28_B2e-172995773MEF2C
5f28_C2e-172995773MEF2C
5f28_D2e-172995773MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00272DAPTransfer from AT2G22540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539176.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8345170.0CT834517.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA022M02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624915.11e-160MADS-box transcription factor 22
SwissprotQ9XJ661e-161MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A0E0CRT61e-161A0A0E0CRT6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GD991e-161A0A0E0GD99_ORYNI; Uncharacterized protein
TrEMBLA2X9V31e-161A2X9V3_ORYSI; Uncharacterized protein
STRINGOMERI02G31030.11e-162(Oryza meridionalis)
STRINGONIVA02G35910.11e-162(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-73MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]