PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539176.1_FGP009
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 193aa    MW: 20752.5 Da    PI: 4.7737
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539176.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10104134134
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...T CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskap 34 
                        +rr+h ++Er+RR+++N+ ++ Lr+l+P++   +
  KN539176.1_FGP009 104 QRRNHIAVERNRRRQMNEYLAVLRSLMPPS---Y 134
                        79**************************97...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.36E-997137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.25E-8102137No hitNo description
Gene3DG3DSA:4.10.280.102.8E-9102134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.598103162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-8104133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MALEAVVFPQ EHLSCAAAMY AAPPSSLGCG VDMDEFEENG GVVLQEEAGA AVHGGGGGGA  60
GGMMSVWVNA ATCARSIAAS GAVEEFWDER KYPVVKNKEE AESQRRNHIA VERNRRRQMN  120
EYLAVLRSLM PPSYAQRCLG LTVLHLNVTT TADHLALYSF SLKMEDECRL SSVDEIAAAV  180
NQMVTKIAGE CIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105115RNHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539176.1_FGP009
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048141e-146AP004814.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0471A11.
GenBankAP0149581e-146AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-146CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015688739.16e-96PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH57-like
TrEMBLA0A0D3FAR15e-73A0A0D3FAR1_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YYG55e-73A0A0D9YYG5_9ORYZ; Uncharacterized protein
TrEMBLI1P4G75e-73I1P4G7_ORYGL; Uncharacterized protein
STRINGOGLUM02G33770.18e-74(Oryza glumipatula)
STRINGORGLA02G0287300.18e-74(Oryza glaberrima)
STRINGOBART02G33270.18e-74(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.16e-19bHLH family protein