PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539183.1_FGP017

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 81aa MW: 9082.43 Da PI: 8.3509

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539183.1_FGP017	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.2	3.8e-05	43	62	36	55
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + s a++L +Ave+Ik Lq KN539183.1_FGP017 43 RQTSTADMLDLAVEHIKGLQ 62 459****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-6	42	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.8E-6	42	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 81 aa Download sequence Send to blast
MASTSALEMA GMDRYLQLQH DQVPFKVRAK RGCATHPRSI AERQTSTADM LDLAVEHIKG 60 LQSQLQALKH EQEKCTCCSR P

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539183.1_FGP017

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK110833	2e-65	AK110833.1 Oryza sativa Japonica Group cDNA clone:002-172-A09, full insert sequence.
GenBank	AP004124	2e-65	AP004124.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1669_F01.
GenBank	AP014958	2e-65	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	2e-65	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625725.1	2e-47	transcription factor bHLH128 isoform X1
Refseq	XP_015625727.1	2e-47	transcription factor bHLH128 isoform X2
Swissprot	Q8H102	1e-24	BH128_ARATH; Transcription factor bHLH128
TrEMBL	A0A0D9YUM1	8e-53	A0A0D9YUM1_9ORYZ; Uncharacterized protein
STRING	OGLUM02G23590.1	1e-53	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11531	31	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05805.1	5e-27	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]