PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539184.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 352aa    MW: 39125.9 Da    PI: 5.595
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539184.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.4e-11183229455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er+RR+++ + f +L +++P+      +K +K+++L  ++eY+++L+
  KN539184.1_FGP005 183 EHVIAERKRREKMHQQFTTLASIVPEI-----TKTDKVSVLGSTIEYVHHLR 229
                        6999**********************7.....6*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.684179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-9183228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-15183246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-14183237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-10184233No hitNo description
SMARTSM003531.9E-12185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007029Biological Processendoplasmic reticulum organization
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAYSTNQIMI LQHAWMLVGE ANSQLIISTV AHSNWYQSNS IEGLHKLQLN MDSSAKQWLA  60
ELENDDDPRE LEHLDPLSMQ QLAESLANEL FNQPQEQQEE QHGYHNPSLR VLPFVGDINK  120
PEGHTPAAAA IRDSFFSLTN GSSSSLNFSA LEQQQDSGPV RKFCPPPSEM KRGGRRATSS  180
VQEHVIAERK RREKMHQQFT TLASIVPEIT KTDKVSVLGS TIEYVHHLRE RVKVLQDIQS  240
MGSTQPPISD ARSRAGSGDD EDDDGNDNEV EIKVEANSRG TSVLLRVVCP EKKGVLIKLL  300
TKLEKLGLST MNTNVVPFAD SSLNITITAQ IDNGSCTTVE LVKNLKSTLR NF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERKRRE
2188193RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539184.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0693240.0AC069324.3 Oryza sativa Japonica Group chromosome 10 clone OSJNBa0071K19, complete sequence.
GenBankAC1451270.0AC145127.1 Oryza sativa Japonica Group chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence.
GenBankAP0149660.0AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015613484.10.0transcription factor bHLH18
TrEMBLQ9AYI80.0Q9AYI8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGORGLA10G0001900.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138961725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-25bHLH family protein