PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539185.1_FGP003
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 905aa    MW: 98307.9 Da    PI: 6.1124
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539185.1_FGP003genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.10.000747107471355
                        HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        R+ i +++ eLre++P+ a      K s  + Lek+v+++  Lq
  KN539185.1_FGP003 710 RQLIQDRIKELREMVPNgA------KCSIDALLEKTVKHMLFLQ 747
                        67799************66......999999********99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.2E-276147IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.493697746IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-4710759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010078Biological Processmaintenance of root meristem identity
GO:0010089Biological Processxylem development
GO:0010479Biological Processstele development
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 905 aa     Download sequence    Send to blast
MAVGDALRRL CEEARWSYAV FWKAIGAADP VHLVWEDGYC GHASCPAGSD PSEALPTDVG  60
CAAAADTMTM CSLVNKVMAS QVHVVGEGTV GRAAFTGNHQ WIIHGAANDH GIPSEVAAEM  120
SYQFRVGIQT IAIIPVLPRG VLQLGSTGVR ISKPIFHAIV NSECADANLW QLPVISSSEK  180
QIKNNSSQQG RSRPLHGASN VQSVENRSKL FSQFPVTCEQ YNRPDTMAVS GSTSLNACMN  240
GSLLKIAQLN GQAVREHIVY SKPDVRFIQQ VYRDGQLGSN AQSIAMSSDL ISSSLRSVQK  300
QPLLMNNISQ LEYGDGADTS ADLQKNVLLK PPVCLDPFIH DPNINISHGI AEVSNVINDH  360
GNFDFLSGGA RVVRANLCTS ATSQVLDRRS HSVSGMLLHR QPIVSCEVPQ SSEFSTKMGS  420
LERGSFQISS APSSESDVQI SNGLNTSISQ ENQLSVSNHI CQDQKINGVN DLSATLSTER  480
MNNMDGCKPP GLSVEKTSPL FMEQSVENDL FDILGPQFHH LCHNAGADLV PWTDAKPESS  540
DRDVPESSIH ADSAPLFSSR DNELYSGIFS LTDTDQLLDA VISNVNPAGK QSSDDSASCK  600
TSLTDIPATS YLCSKEMKQC RSSGVPSVLI KNESAQFIKQ PCLAENAEDG CLSQNNGMHK  660
SQIRLWIESG QSMKCESASA SNSKGLDTPS KANRKRSRPG ESPKPRPKDR QLIQDRIKEL  720
REMVPNGAKC SIDALLEKTV KHMLFLQSVT KHADKLKDST ESKILGSENG PVWKDYFEGG  780
ATWAFDVGSQ SMTCPIIVED LDRPRQMLVE MICEDRGIFL EIADFIKGLG LTILRGAMEA  840
RKSKIWARFT VEANRDVTRM EIFLSLVRLL EPNCDSSGAA ENANNVNMPL GLAHQPVIPA  900
TGRIQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539185.1_FGP003
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1332170.0AC133217.2 Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0052H02, complete sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616921.10.0transcription factor LHW isoform X1
TrEMBLA0A0E0F2S10.0A0A0E0F2S1_9ORYZ; Uncharacterized protein
STRINGORUFI11G03710.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26543242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.12e-54conserved peptide upstream open reading frame 7