PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539187.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 173aa    MW: 20087.4 Da    PI: 10.7166
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539187.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2422.4e-133591155
                AP2  1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                       s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  KN539187.1_FGP008 35 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 91
                       78*******************77776664346655.77******************98 PP
2AP226.41.7e-08136168338
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 
                        y+GV+++++ grW A+I  +s    +k  +lg+f t
  KN539187.1_FGP008 136 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFST 168
                        9***************999754...4********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-103591IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-1535100IPR016177DNA-binding domain
CDDcd000186.25E-173599No hitNo description
Gene3DG3DSA:3.30.730.101.5E-1336100IPR001471AP2/ERF domain
SMARTSM003808.3E-2336105IPR001471AP2/ERF domain
PROSITE profilePS5103217.3593699IPR001471AP2/ERF domain
PRINTSPR003678.2E-63748IPR001471AP2/ERF domain
PRINTSPR003678.2E-681101IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-7134169IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.9E-6135169IPR001471AP2/ERF domain
PROSITE profilePS5103210.586135173IPR001471AP2/ERF domain
SMARTSM003800.0024135173IPR001471AP2/ERF domain
PfamPF008473.3E-4136168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAMDAVSKKR GGADRGGQKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK  60
EGQTRKGRQG GYDMEEKAAR AYDLAALKYW GPSTHINFPL EDYQEELEEM KNMTRQEYVA  120
HLRRKSSGFS RGASMYRGVT RHHQHGRWQA RIGRVSGNKD LYLGTFSTNH HRS
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539187.1_FGP008
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1098481e-160AK109848.1 Oryza sativa Japonica Group cDNA clone:002-148-F05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025879550.11e-116AP2-like ethylene-responsive transcription factor CRL5 isoform X2
SwissprotQ84Z021e-104CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A0D3FPK41e-116A0A0D3FPK4_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZDQ41e-116A0A0D9ZDQ4_9ORYZ; Uncharacterized protein
TrEMBLB9F5X01e-116B9F5X0_ORYSJ; Uncharacterized protein
STRINGOGLUM03G35380.11e-117(Oryza glumipatula)
STRINGOBART03G35620.11e-117(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-100AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]