PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539193.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 333aa    MW: 35035.4 Da    PI: 9.1591
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539193.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.64e-31154246186
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+ tpsdv+k++rlv+pk++ae+h        g + +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++
  KN539193.1_FGP004 154 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRS 245
                        89*******************************5556799*************************************************965 PP

                        S CS
                 B3  86 g 86 
                         
  KN539193.1_FGP004 246 A 246
                        3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.1E-38150248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.95E-29152257No hitNo description
SuperFamilySSF1019362.09E-30152247IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.662154265IPR003340B3 DNA binding domain
PfamPF023626.0E-28154246IPR003340B3 DNA binding domain
SMARTSM010197.1E-21154262IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDSSSCLVDD TNSGGSSTDK LRALAAAAAE TAPLERMGSG ASAVVDAAEP GAEADSGSGG  60
RRFRGRDAVT NFRPLAEADP DAAAELRFLA TRSKAEVVDM LRKHTYFDEL AQSKRAFAAS  120
TPSAATTTNA SLSNGHLSSP RSPFAPAAAR DHLFDKTVTP SDVGKLNRLV IPKQHAEKHF  180
PLQLPSAGGE SKGVLLNFED AAGKVWRFRY SYWNSSQSYV LTKGWSRFVK EKGLHAGDVV  240
GFYRSAASAG DDGKLFIDCK LVRSTGAALA SPADQPAPSP VKAVRLFGVD LLTAPAPAPA  300
EQMAGCKRAR DLAATTPPQA AAFKKQCIEL ALV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-511482602111B3 domain-containing transcription factor NGA1
5os9_B7e-511482602111B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539193.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419840.0AK241984.1 Oryza sativa Japonica Group cDNA, clone: J075097P17, full insert sequence.
GenBankAP0034500.0AP003450.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0034C09.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015622542.11e-174AP2/ERF and B3 domain-containing protein Os01g0693400
SwissprotQ8RZX91e-175Y1934_ORYSJ; AP2/ERF and B3 domain-containing protein Os01g0693400
TrEMBLA0A0E0JMR40.0A0A0E0JMR4_ORYPU; Uncharacterized protein
STRINGOPUNC01G27280.10.0(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45638203
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.25e-66related to ABI3/VP1 2