PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539194.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Whirly
Protein Properties Length: 369aa    MW: 40346.5 Da    PI: 6.9441
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539194.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly180.63e-561933302139
             Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                        v+k+kaal++++++p+f++l+sg  +++++G+++l++ +a+++rkyd++kkq fals+tev++l++l++ esceffhdp++k+s+eG+v+k+
  KN539194.1_FGP001 193 VFKGKAALSMHPILPSFSKLESGGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQVKKS 284
                        9******************************************************************************************* PP

             Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                        l+v Pl + sG+f+n++v n+l+k+ e++s+P+skaef+v+r++l+
  KN539194.1_FGP001 285 LSVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALS 330
                        *******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046699.2E-473129IPR021148Polysaccharide biosynthesis domain
TIGRFAMsTIGR016276.6E-455128IPR006514IRX15/IRX15L/IGXM
Gene3DG3DSA:2.30.31.107.0E-72180349IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544474.24E-74184369IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.7E-57193327IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045492Biological Processxylan biosynthetic process
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEGALPGLEA YDVSYATAVR EFPDLLDAAR AAQSADCRPV QNLLFSDCRL AINDLPNQLY  60
DVSWDVILVD GPSGFTEGSP GRMSAIFSAA VMARTKGSET EVLVHDYQRE VEIACAREFL  120
CPENRGEATA TPDGGGKARQ TMQRLSRFVP SSSRRVTDLK DALWSGSLTF QHALSTFAAD  180
ENTSGKKFAS YTVFKGKAAL SMHPILPSFS KLESGGSRVN KNGSVMLTFF PAVGQRKYDY  240
SKKQLFALSP TEVGSLISLG PAESCEFFHD PSMKSSHEGQ VKKSLSVTPL GNDSGYFLNI  300
TVLNNLQKTT ERLSLPISKA EFTVMRTALS FALPHILGWD QALTNHQPSP SPASKPRVER  360
PHPDSEWER
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A6e-701843468169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B6e-701843468169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C6e-701843468169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D6e-701843468169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539194.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0615690.0AK061569.1 Oryza sativa Japonica Group cDNA clone:006-311-F08, full insert sequence.
GenBankAK0994790.0AK099479.1 Oryza sativa Japonica Group cDNA clone:J013025B22, full insert sequence.
GenBankAK1047680.0AK104768.1 Oryza sativa Japonica Group cDNA clone:001-039-A03, full insert sequence.
GenBankCT8285100.0CT828510.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129J03, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627387.11e-165single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0342e-72WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0E0NA491e-163A0A0E0NA49_ORYRU; Uncharacterized protein
TrEMBLB8AI561e-163B8AI56_ORYSI; Uncharacterized protein
TrEMBLI1NXF61e-163I1NXF6_ORYGL; Uncharacterized protein
TrEMBLQ6ET431e-163Q6ET43_ORYSJ; Os02g0158400 protein
STRINGORUFI02G04590.11e-164(Oryza rufipogon)
STRINGOS02T0158400-011e-164(Oryza sativa)
STRINGORGLA02G0041200.11e-164(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.11e-71WHIRLY 2