PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539195.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 257aa    MW: 27998.8 Da    PI: 8.6634
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539195.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA47.91.9e-15152188135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C+nCg ++  Tp +Rrgp g+++LCnaCGl+++ kg+
  KN539195.1_FGP013 152 CQNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 188
                        **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062035.1E-1681121IPR010402CCT domain
PROSITE profilePS5101713.49381123IPR010402CCT domain
SMARTSM004016.0E-10146200IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.3E-14150190IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.95E-10150200No hitNo description
PROSITE patternPS003440152179IPR000679Zinc finger, GATA-type
CDDcd002026.28E-13152198No hitNo description
PfamPF003203.5E-13152188IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MDPTTPVLVA ADLATPLLTT TNPAERRRDG VCGRVPIFGE FENRVQAVLL VLGGSDMPPG  60
LVSMAVPTTF DEKSTTVAAR RVASLMRFRE KRKERCFDKK IRYSVRKEVA QKMKRRKGQF  120
AGRADFGDGS CSSAPCGSTA NGEDDHIRET HCQNCGISSR LTPAMRRGPA GPRSLCNACG  180
LMWANKGTLR SPLNAPKMTV QHPADLSKTG DTDDSKANLC AEHNQTTMKT DTEMVPEQEQ  240
KADVLPPTKE EDSMATS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539195.1_FGP013
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2880760.0AK288076.1 Oryza sativa Japonica Group cDNA, clone: J075163P08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015632019.11e-158GATA transcription factor 19 isoform X1
SwissprotQ0DNU11e-159GAT19_ORYSJ; GATA transcription factor 19
TrEMBLA0A0E0GTG61e-156A0A0E0GTG6_ORYNI; Uncharacterized protein
STRINGOS03T0734900-001e-157(Oryza sativa)
STRINGONIVA03G34920.11e-157(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.23e-44ZIM-LIKE 2