PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539201.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 158aa    MW: 17712.7 Da    PI: 6.9349
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539201.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.77.8e-171358555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       h ++ErrRR++iN++f eL  ++Pk+     kK++Ka+iL  A  YI++Lq
  KN539201.1_FGP004 13 HIIAERRRREKINQRFMELSAVIPKL-----KKMDKATILSDAASYIRELQ 58
                       999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.859857IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.0E-201269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-141358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-181375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.55E-151362No hitNo description
SMARTSM003535.3E-161463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MDDSSLFLQW ADHIIAERRR REKINQRFME LSAVIPKLKK MDKATILSDA ASYIRELQEK  60
LKALEEQAAA RVTEAAMATP SPARAMNHLP VPPEIEVRCS PTNNVVMVRI HCENGEGVIV  120
RILAEVEEIH LRIINANVMP FLDQGACTMI ITIAAKAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-141261857Transcription factor MYC2
5gnj_B9e-141261857Transcription factor MYC2
5gnj_E9e-141261857Transcription factor MYC2
5gnj_F9e-141261857Transcription factor MYC2
5gnj_G9e-141261857Transcription factor MYC2
5gnj_I9e-141261857Transcription factor MYC2
5gnj_M9e-141261857Transcription factor MYC2
5gnj_N9e-141261857Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11621ERRRRE
21722RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539201.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1163690.0AC116369.5 Oryza sativa chromosome 3 BAC OSJNBb0113I20 genomic sequence, complete sequence.
GenBankAC1467180.0AC146718.2 Oryza sativa chromosome 3 B1130H05 genomic sequence, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880235.15e-94LOW QUALITY PROTEIN: transcription factor NAI1
TrEMBLA0A0D9ZBD93e-94A0A0D9ZBD9_9ORYZ; Uncharacterized protein
TrEMBLA2XKH63e-94A2XKH6_ORYSI; Uncharacterized protein
TrEMBLQ10FE32e-94Q10FE3_ORYSJ; Helix-loop-helix DNA-binding domain containing protein
STRINGOGLUM03G29200.15e-95(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.23e-26bHLH family protein