PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539205.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 418aa    MW: 44477 Da    PI: 9.2898
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539205.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.89.4e-06628123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C+ C+k F r  nL+ H r H
  KN539205.1_FGP013  6 FVCEVCNKGFQREQNLQLHRRGH 28
                       89*******************88 PP
2zf-C2H212.90.0003282104123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C +C+k++  +s+ k H +t+
  KN539205.1_FGP013  82 WRCDKCSKRYAVQSDWKAHSKTC 104
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.83E-7528No hitNo description
Gene3DG3DSA:3.30.160.605.4E-6528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.094628IPR007087Zinc finger, C2H2
SMARTSM003550.0041628IPR015880Zinc finger, C2H2-like
PfamPF121712.6E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.2E-470103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.83E-777102No hitNo description
SMARTSM0035515082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPK EARRRVYLCP EPSCVHHDPS  60
RALGDLTGIK KHYCRKHGEK KWRCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQENARM PPIGAGVYGG AGNMTLGLTG MAAPQLPAGF TDQSGQAPSA  180
SAGDVLRLGG GSNGASQFDH LMASSSGSSM FRSQGSSSSS FYLANGAAHH APAQDFGPED  240
GQSQAGQGSL LHGKPAAFHD LMQLPVQHQQ SSNGNLLNLG FFSGSNGGVD QFNGGAGNGG  300
QGSIMSATAL LQKAAQMGAT TSSYNAGGAG GASSLLRGAS SHGITAELVK KLEVINQEEK  360
VDLNPCKMDV SGNLELLMVQ LKHYIAAMLA TSKLSYYAAT TVHAIAHSTC TGRAQLIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-3678143368Zinc finger protein JACKDAW
5b3h_F9e-3678143368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539205.1_FGP013
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1011810.0AK101181.1 Oryza sativa Japonica Group cDNA clone:J033029F02, full insert sequence.
GenBankAK1019500.0AK101950.1 Oryza sativa Japonica Group cDNA clone:J033075E02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015612461.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612462.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612463.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612465.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_015612466.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ8GYC11e-101IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLA0A0E0QUX90.0A0A0E0QUX9_ORYRU; Uncharacterized protein
TrEMBLB9G5030.0B9G503_ORYSJ; Uncharacterized protein
STRINGORUFI09G20760.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17333798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.17e-99indeterminate(ID)-domain 5
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]