PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539211.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 221aa    MW: 24964.6 Da    PI: 8.3236
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539211.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.99.6e-10691032155
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        + +yps+ e+  LA+++gL+++q+ +WF N+R ++
  KN539211.1_FGP004  69 RWPYPSEMEKIALAESTGLEQKQINNWFINQRKRH 103
                        669*****************************885 PP
2ELK346.4e-122444222
                ELK  2 LKhqLlrKYsgyLgsLkqEFs 22
                       LK++LlrKYsgyLg+L++E+s
  KN539211.1_FGP004 24 LKRHLLRKYSGYLGGLRKELS 44
                       9******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121310.1092343IPR005539ELK domain
SMARTSM011885.4E-62344IPR005539ELK domain
PfamPF037894.6E-82444IPR005539ELK domain
PROSITE profilePS5007113.05443106IPR001356Homeobox domain
SuperFamilySSF466894.6E-1944115IPR009057Homeodomain-like
SMARTSM003892.1E-1245110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-2748109IPR009057Homeodomain-like
CDDcd000865.12E-1255106No hitNo description
PfamPF059202.2E-1663102IPR008422Homeobox KN domain
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MEMMDAAEDE DLGIIDPRSD DKALKRHLLR KYSGYLGGLR KELSKKRKKG KLPKEARQKL  60
LTWWELHYRW PYPSEMEKIA LAESTGLEQK QINNWFINQR KRHWKPTEEM QFAVMEAYHH  120
QSADAAAAAA SVHMNSLALQ KMDGSCNRRA ETKDMDVQRV HTTQGAWCSY PLELGNVSVV  180
PSDAFDGIPI GVSDRLCAIQ DCVFGSSVSL SLGSTLLVVK G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13847LRKELSKKRK
24448KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539211.1_FGP004
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0716640.0AB071664.1 Oryza sativa Indica Group mRNA for transcription factor OSH3, complete cds, cultivar:IR24.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628822.16e-74homeobox protein knotted-1-like 7
SwissprotQ948L56e-75KNOS7_ORYSJ; Homeobox protein knotted-1-like 7
TrEMBLA0A0D9ZCJ85e-87A0A0D9ZCJ8_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GT765e-87A0A0E0GT76_ORYNI; Uncharacterized protein
TrEMBLB8AR116e-87B8AR11_ORYSI; Uncharacterized protein
STRINGOGLUM03G32350.19e-88(Oryza glumipatula)
STRINGONIVA03G34220.19e-88(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150631819
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-46KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Sato Y,Aoki Y,Matsuoka M
    A loss-of-function mutation in the rice KNOX type homeobox gene, OSH3.
    Plant Cell Physiol., 2002. 43(1): p. 44-51
    [PMID:11828021]
  2. Sato Y,Fukuda Y,Hirano HY
    Mutations that cause amino acid substitutions at the invariant positions in homeodomain of OSH3 KNOX protein suggest artificial selection during rice domestication.
    Genes Genet. Syst., 2001. 76(6): p. 381-92
    [PMID:11922107]