PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539213.1_FGP004

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 142aa MW: 15498.7 Da PI: 8.5122

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539213.1_FGP004	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	77	2.4e-24	2	44	13	55
G2-like 13 rFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +Fv+ave+LGG+e+AtPk +l++m+v gL+++hvkSHLQ+YR+ KN539213.1_FGP004 2 AFVHAVERLGGQERATPKLVLQMMNVRGLSIAHVKSHLQMYRS 44 6*****************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.715	1	47	IPR017930	Myb domain
TIGRFAMs	TIGR01557	6.4E-17	2	46	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	1.7E-20	2	45	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.31E-8	2	45	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 142 aa Download sequence Send to blast
MAFVHAVERL GGQERATPKL VLQMMNVRGL SIAHVKSHLQ MYRSKKLDHE GRQIRGAIAS 60 GEQEAEKDMD RCKNKLSISL SLSPPAASAA AAAANFSSMD LSMEQQKQKQ KQEKTTIGSS 120 EEEAGDLGQS TLDLTMSIRA LE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates carpel integuments formation. Required for the specification of polarity in the ovule inner integument. Modulates the content of flavonols and proanthocyanidin in seeds. {ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:19054366, ECO:0000269\|PubMed:20444210}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539213.1_FGP004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP005613	1e-104	AP005613.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBa0082C09.
GenBank	AP014958	1e-104	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015625548.1	1e-35	uncharacterized protein LOC107275964
Swissprot	Q9FJV5	3e-17	KAN4_ARATH; Probable transcription factor KAN4
TrEMBL	A0A0D3F2Y1	2e-34	A0A0D3F2Y1_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9YLR7	3e-34	A0A0D9YLR7_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0G446	4e-34	A0A0E0G446_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0NC90	3e-34	A0A0E0NC90_ORYRU; Uncharacterized protein
TrEMBL	A2X2U5	3e-34	A2X2U5_ORYSI; Uncharacterized protein
TrEMBL	I1NYW1	4e-34	I1NYW1_ORYGL; Uncharacterized protein
TrEMBL	Q6ER41	3e-34	Q6ER41_ORYSJ; Myb family transcription factor-like
STRING	OGLUM02G02260.1	5e-35	(Oryza glumipatula)
STRING	ORUFI02G10190.1	6e-35	(Oryza rufipogon)
STRING	OS02T0241200-00	6e-35	(Oryza sativa)
STRING	ONIVA02G11280.1	6e-35	(Oryza nivara)
STRING	ORGLA02G0091700.1	6e-35	(Oryza glaberrima)
STRING	OBART02G10190.1	3e-35	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2754	36	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-26	G2-like family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Gomez MD,Ventimilla D,Sacristan R,Perez-Amador MA Gibberellins Regulate Ovule Integument Development by Interfering with the Transcription Factor ATS. Plant Physiol., 2016. 172(4): p. 2403-2415 [PMID:27794102]