PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539230.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 495aa    MW: 51636.4 Da    PI: 4.6813
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539230.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.22.5e-07378404227
                        -S---S.GGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCr.ffartGtCkyGdrCkFaHgp 27 
                        kt+lC+ +++r   C++G++Ck+aHg+
  KN539230.1_FGP007 378 KTKLCSeYYSRALGCPRGNTCKYAHGE 404
                        7888872566666************96 PP
2zf-CCCH28.91.9e-09439465127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        ykt+lC++f  +G C++ ++C+FaHg+
  KN539230.1_FGP007 439 YKTKLCKTFTSGGLCRFAANCRFAHGE 465
                        9************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902294.71E-6375409IPR000571Zinc finger, CCCH-type
SMARTSM003560.49376404IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.972376405IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-9378408IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5378404IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-13437468IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.962438466IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6438465IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-8438468IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-6439465IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.774468495IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5469494IPR000571Zinc finger, CCCH-type
SMARTSM003560.45469495IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MADSEDGDHA ATTTEQRYDD DGHLVPSSGG QEEEGSGGRD VGVPGGHVAE DHRSGVGVPV  60
GRDAGSATSS SPQPVHVTPS ILVGSIHAPV FQGELVGMKF GVGSGSMGAS TSATRRLPAT  120
GFGALPTSSM AEDSADHADD DHLAEEEEEE EAQHYIDDEH LVPSSGGQEE EGSGGRHVFV  180
PGGHDGEEDH PDDLVADLDL DLLVDGVVGP VPGGHLNADA PAFVPTTRGR QDLYSALSSS  240
APAAGYRYRH YITSSALAEA GHVSPFLGLP YATAFDSPLD RELVGPSSAP PPCSAASRAW  300
LVRGSSPFSD SEWTRRSILA REAAHTPAST VTGRGRFEFV PIPGAPYAPP PSFAPIAAGA  360
GPAARPLQQL AFGLEEHKTK LCSEYYSRAL GCPRGNTCKY AHGEDDLRLV VAVSSLADAG  420
EGSSSSDSSS AVLGGEDKYK TKLCKTFTSG GLCRFAANCR FAHGEVELGK KEPCWYFFSG  480
QTCPRGDTCG FRHSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539230.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038290.0AP003829.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1417_E01.
GenBankAP0043140.0AP004314.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0495H05.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882954.10.0putative zinc finger CCCH domain-containing protein 48
SwissprotQ8GVZ80.0C3H48_ORYSJ; Putative zinc finger CCCH domain-containing protein 48
TrEMBLA0A0E0H3Z70.0A0A0E0H3Z7_ORYNI; Uncharacterized protein
STRINGOS07T0139000-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP173811111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.14e-08C3H family protein