PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539232.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 688aa    MW: 75441.6 Da    PI: 7.7929
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539232.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.51.1e-1376165180
                        EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.......TTHHHHHHHHT--TT CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvlt.......kGWkeFvkangLkeg 77 
                        f+k+l+p+dv++++ lvlp     eh         +++++   l ++d++g+++e+ +i++kk+ ry+l+       +GW++Fvka++L ++
  KN539232.1_FGP007  76 FEKKLSPADVTSNA-LVLPAGA--EHvlppldiaAYQTAR--LLDVRDLRGKRFEFVHIWDKKRLRYMLGdlgvndnDGWRGFVKAKRLATR 162
                        99***********9.9999774..5659999887666544..7**********************************************998 PP

                        -EE CS
                 B3  78 Dfv 80 
                         +v
  KN539232.1_FGP007 163 NSV 165
                        876 PP
2B375.84.8e-24405510199
                        EEEE-..-HHHHT.....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.......EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                 B3   1 ffkvltpsdvlks.....grlvlpkkfaeehggkkeesktltledesgrsWevkliy.....rkksgryvltkGWkeFvkangLkegDfvvF 82 
                        f+k+l+psdv ++     +++v+pk+ a+eh ++ + + +l+++d++g +We+ +++     +++s++++l++GW+ Fvka++L++gD+v+F
  KN539232.1_FGP007 405 FDKKLSPSDVAANgggsgALFVIPKPSAAEHVLP-RIP-DLRVTDLQGGRWEFGHTWsdadtDRRSSSHTLAAGWSAFVKAKRLCVGDTVIF 494
                        89***********99998899**********776.455.9********************99999999************************ PP

                        EE-SSSEE..EEEEE-S CS
                 B3  83 kldgrsefelvvkvfrk 99 
                        ++ +r ++e++ +v rk
  KN539232.1_FGP007 495 MR-RRPGGEPLAGVSRK 510
                        *4.349*****999987 PP
3Auxin_resp26.92e-10168237976
         Auxin_resp   9 svFevvYnPrastseFvvkvekvek.alk..vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpn 76 
                        ++Fev+Y+Pr +t eFvv+++++   +++   ++ +G+ + ++++    ++ ++sGtv+   +l p r  +
  KN539232.1_FGP007 168 TPFEVTYYPREGTFEFVVSRDEYIGfSFSpfYPFVPGTTVHLRMNPLQIAQ-SVSGTVRTFDHLRPWRMLE 237
                        79*******************9875333344999***********998865.66*******9999966555 PP
4Auxin_resp57.65.5e-20527603183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl...sGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ +as++++F+v+Y+P+++t+eFvv++e+v  +   ++++G+R+++ ++ +d ++r++   +Gtv   +d+d+    +S+Wr+L+
  KN539232.1_FGP007 527 AWLDASSAQPFRVTYCPWQGTAEFVVRREEVDGSP--PLAPGTRVRLLMNPDDTRRRSQppvYGTV---RDVDS----RSEWRMLE 603
                        67889*****************************9..*********************95555555...55555....9****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-1570165IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-1071165IPR015300DNA-binding pseudobarrel domain
CDDcd100176.58E-874159No hitNo description
PROSITE profilePS508637.5775189IPR003340B3 DNA binding domain
SMARTSM010190.4676189IPR003340B3 DNA binding domain
PfamPF023621.5E-1076165IPR003340B3 DNA binding domain
PfamPF065073.2E-5168240IPR010525Auxin response factor
Gene3DG3DSA:2.40.330.106.3E-19399503IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15400501IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-12404503No hitNo description
SMARTSM010194.6E-6405511IPR003340B3 DNA binding domain
PfamPF023626.6E-14406510IPR003340B3 DNA binding domain
PROSITE profilePS5086310.419410511IPR003340B3 DNA binding domain
PfamPF065071.8E-7531602IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MAQPPDAAAA AVPPPVVIDR DVWHACAVPY SGVLPGVGIP HGHIEQCAED PALLLSRLQD  60
PIHPVPAHGE PGFRFFEKKL SPADVTSNAL VLPAGAEHVL PPLDIAAYQT ARLLDVRDLR  120
GKRFEFVHIW DKKRLRYMLG DLGVNDNDGW RGFVKAKRLA TRNSVGVTPF EVTYYPREGT  180
FEFVVSRDEY IGFSFSPFYP FVPGTTVHLR MNPLQIAQSV SGTVRTFDHL RPWRMLEVDW  240
DQAASPISYS IHRQVNFWQV LRQPQPAATT SAVRIRDAIV ATPQVQIMAP PPPPTTTTGM  300
VPVIDHDIWL ACATPYSGRL PVVGSAVYYF PQGHAEQCHT CTTCLIPDNR HRLRCTVTGI  360
DFAVDAQSDD SYAMISLFPG DCYVTHRPLP AARDPAGGQR ELCFFDKKLS PSDVAANGGG  420
SGALFVIPKP SAAEHVLPRI PDLRVTDLQG GRWEFGHTWS DADTDRRSSS HTLAAGWSAF  480
VKAKRLCVGD TVIFMRRRPG GEPLAGVSRK PHGGMPVGIP DKHVADAWLD ASSAQPFRVT  540
YCPWQGTAEF VVRREEVDGS PPLAPGTRVR LLMNPDDTRR RSQPPVYGTV RDVDSRSEWR  600
MLEVDWDRDS PLAPTMNRRV NSWQVQPVQL SLPAASTSTA HAGDATTSAP SLALQVQTMA  660
SSSSSSAPII PSRGSAFRIV NPRDGSQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-3030262649388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539232.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0038350.0AP003835.4 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1506_G02.
GenBankAP0038610.0AP003861.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OJ1046_F10.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882775.10.0putative auxin response factor 20
SwissprotA3BH850.0ARFT_ORYSJ; Putative auxin response factor 20
TrEMBLA0A0E0AGK10.0A0A0E0AGK1_9ORYZ; Auxin response factor
STRINGOGLUM07G04870.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP169621012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-36auxin response factor 17