PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539238.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 197aa    MW: 21294.9 Da    PI: 8.857
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539238.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.56.6e-19125164137
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEE CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkk 37 
                        +dDg++WrKYGqKe+ g+++pr+YYrCt++   gC+++k+
  KN539238.1_FGP005 125 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRnsqGCMATKQ 164
                        59***************************98889***998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-18114164IPR003657WRKY domain
PROSITE profilePS5081117.006120164IPR003657WRKY domain
SuperFamilySSF1182904.45E-17121165IPR003657WRKY domain
SMARTSM007744.7E-20125175IPR003657WRKY domain
PfamPF031061.8E-17126164IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MESMEGNGGG RLVVTELSHI KELVRQLEGH LGGSGSPDLC KHLASQIFSV TERSIGMIRS  60
GHFDGHRKRS AAAVAAGDLD SATPSPLSDV SDLPFKATKK RKTSTEKKRH QIRVSSTGGV  120
ENPPVDDGHS WRKYGQKEIL GAKHPRGYYR CTHRNSQGCM ATKQPAPASA MVDADLSALD  180
AFEFDPGFTI DITSFFA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539238.1_FGP005
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0652650.0AK065265.1 Oryza sativa Japonica Group cDNA clone:J013002K14, full insert sequence.
GenBankAY6769300.0AY676930.1 Oryza sativa (indica cultivar-group) transcription factor WRKY74 (WRKY74) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015651250.11e-116probable WRKY transcription factor 30
TrEMBLA0A0D3H5G31e-117A0A0D3H5G3_9ORYZ; Uncharacterized protein
STRINGOGLUM09G06630.11e-116(Oryza glumipatula)
STRINGOMERI09G04420.11e-116(Oryza meridionalis)
STRINGOBART09G06020.11e-116(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-24WRKY DNA-binding protein 46