PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539243.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 225aa    MW: 25429.8 Da    PI: 5.333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539243.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM591.6e-18712511127
                NAM  11 deelvveyLkkkvegkk..leleevikevdiykvePwdLp.kkvkaeek.ewyfFskrdkkya...tgkrknratksgyWkatgkdkevlsk 95 
                        d+el+ + L  k++g +    l+ v+++++i++++P +L  + ++ ee+  +yfFs+ + k+a   ++k ++ra++ g+Wk+   + ++++ 
  KN539243.1_FGP001   7 DQELL-DILDDKLRGAPldRALDAVFHDTRILDFHPAKLYgMYAEDEENgYIYFFSTIEFKAAkpkQKKWPRRAAQGGRWKTVLGSSQLVEV 97 
                        89999.88*********53333456**************83344444443459**998777663335778899********88777777777 PP

                NAM  96 kgelvglkktLvfykgrapkgektdWvmheyr 127
                        +g  vg k ++ fy     kg++t+W mhe+ 
  KN539243.1_FGP001  98 GGVPVGRKLSMEFY----VKGVRTNWGMHEFV 125
                        **************....899*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.3541145IPR003441NAC domain
SuperFamilySSF1019411.24E-237143IPR003441NAC domain
PfamPF023655.5E-87124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MDPDDWDQEL LDILDDKLRG APLDRALDAV FHDTRILDFH PAKLYGMYAE DEENGYIYFF  60
STIEFKAAKP KQKKWPRRAA QGGRWKTVLG SSQLVEVGGV PVGRKLSMEF YVKGVRTNWG  120
MHEFVRIIGP NIEVADLAVY RLHKLWTNGE KPGDLAADVA KSTNQSGQAS AADYYQTYQY  180
AVSHVQPINF TLFLSIGYYF TCSIRETETA IVICISATAC NLDDQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539243.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1099040.0AK109904.1 Oryza sativa Japonica Group cDNA clone:002-149-F12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614522.11e-122uncharacterized protein LOC4348616
TrEMBLA3C4Q01e-122A3C4Q0_ORYSJ; Uncharacterized protein
STRINGORUFI10G10340.11e-122(Oryza rufipogon)
STRINGOS10T0413700-011e-122(Oryza sativa)
STRINGOBART10G09840.11e-122(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35632367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.12e-07NAC domain containing protein 3