PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539243.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 152aa MW: 17555 Da PI: 5.0373

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539243.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	59.9	8.7e-19	11	136	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkkvka.eekew..yfFskrdkkyatgkrknratksgyWkatgkdk 90 +G rF P+d el+ L +k++g++ ++e ++++++i++++P +L +++++ ee+e yfFs+ + + k +ra++ g+Wk + KN539243.1_FGP003 11 VGARFLPKDLELL-AILDAKLRGSPlGPVEAIFHDTQILDFHPYKLYEMYAEdEEEEGyiYFFSTMQFRC--RKIVERAAQGGRWKVNNC-E 98 79*********.78*****54555569*********743333133333347777776665..57899*****7655.3 PP NAM 91 evlskkgelvglkktLvfyk..grapkgektdWvmheyr 127 ++ + +g +vg k t+ fy+ g +++ t+W m+e++ KN539243.1_FGP003 99 TLEV-GGVAVGRKFTMNFYEhiGGDNDLIWTNWGMQEFA 136 4444.89********5336788889******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.18E-24	6	142	IPR003441	NAC domain
PROSITE profile	PS51005	18.822	9	152	IPR003441	NAC domain
Pfam	PF02365	1.3E-10	11	136	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MAAPEGQNKF VGARFLPKDL ELLAILDAKL RGSPLGPVEA IFHDTQILDF HPYKLYEMYA 60 EDEEEEGYIY FFSTMQFRCR KIVERAAQGG RWKVNNCETL EVGGVAVGRK FTMNFYEHIG 120 GDNDLIWTNW GMQEFARIIG PNKEVFHSEI HF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539243.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC027660	1e-162	AC027660.2 Oryza sativa Japonica Group chromosome 10 clone BAC nbxb0045B21, complete sequence.
GenBank	AP014966	1e-162	AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence.
GenBank	CP012618	1e-162	CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025876515.1	7e-98	uncharacterized protein LOC4348617
TrEMBL	A0A0E0IS19	1e-96	A0A0E0IS19_ORYNI; Uncharacterized protein
STRING	ONIVA10G09240.1	2e-97	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19206	9	9