PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539245.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 242aa    MW: 27472.8 Da    PI: 6.373
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539245.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.31.1e-071171502154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp+++++++L +++gL+ +q+ +WF N+R +
  KN539245.1_FGP006 117 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 150
                        469*****************************87 PP
2ELK27.38.3e-107192122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELK++L+++Y+++L+++++E++
  KN539245.1_FGP006 71 ELKNELKQGYKEKLVDIREEIL 92
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5121310.0577191IPR005539ELK domain
PfamPF037891.4E-67192IPR005539ELK domain
SMARTSM011880.00237192IPR005539ELK domain
PROSITE profilePS5007111.35391154IPR001356Homeobox domain
SuperFamilySSF466895.13E-1693156IPR009057Homeodomain-like
SMARTSM003892.3E-1093158IPR001356Homeobox domain
CDDcd000863.14E-1194155No hitNo description
Gene3DG3DSA:1.10.10.606.4E-2598155IPR009057Homeodomain-like
PfamPF059205.9E-18111150IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MGCWELEQSL QSLTGASPGE GTGATMSDDE DNQVDSEANM FDGNDGSDGM GFGPLMLTEG  60
ERSLVERVRH ELKNELKQGY KEKLVDIREE ILRKRRAGKL PGDTASILKA WWQAHSKWPY  120
PTEDDKARLV QETGLQLKQI NNWFINQRKR NWHSNPASSG EKTKKKSQIL TWTGEENCPE  180
KHTVQRLDLY AFEKPTNDSD GTGRIVLPFI SLDIDSEASA TVFWRSKWAI KSLSCHKRMM  240
GQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539245.1_FGP006
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8354390.0CT835439.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA051K01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006646986.11e-120PREDICTED: homeobox protein knotted-1-like 2 isoform X1
SwissprotQ0E3C31e-120KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A0D3F1M21e-118A0A0D3F1M2_9ORYZ; Uncharacterized protein
TrEMBLJ3LA921e-119J3LA92_ORYBR; Uncharacterized protein
STRINGOMERI02G07110.11e-119(Oryza meridionalis)
STRINGOB02G15590.11e-119(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.13e-97KNOTTED1-like homeobox gene 3