PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539249.1_FGP013
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 104aa    MW: 11226.5 Da    PI: 9.4407
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539249.1_FGP013genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.92.8e-0629711454
                       HHHHHHHHHHHCTSCCC.....TTS-STCHHHHHHHHHHHHHH CS
                HLH 14 driNsafeeLrellPkas..kapskKlsKaeiLekAveYIksL 54
                       d+i + +++L+ llP +s  ++++ + s a +L++++ YI+sL
  KN539249.1_FGP013 29 DQIVELLSKLQALLPDQSqaRNGAHRGSAARVLQETCSYIRSL 71
                       5777899*********8867777778***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.0581571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.3E-82975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-73090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009741Biological Processresponse to brassinosteroid
GO:0009826Biological Processunidimensional cell growth
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 104 aa     Download sequence    Send to blast
MSSSRRSRSR RAGSSVPSSS SSRSSISEDQ IVELLSKLQA LLPDQSQARN GAHRGSAARV  60
LQETCSYIRS LHQEVDNLSE TLAQLLASPD VTSDQAAVIR SLLM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination (By similarity). {ECO:0000250}.
UniProtAtypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of cell elongation and plant development. Binds the transcription repressor IBH1 and forms a heterodimer of antagonistic bHLH transcription factors that function downstream of BZR1 to mediate brassinosteroid regulation of cell elongation and lamina inclination. {ECO:0000269|PubMed:20009022}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539249.1_FGP013
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By epibrassinolide. {ECO:0000269|PubMed:20009022}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0965981e-82FP096598.1 Phyllostachys edulis cDNA clone: bphyst010g20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652899.14e-46PREDICTED: transcription factor ILI1
SwissprotA2XY472e-45ILI1_ORYSI; Transcription factor ILI1
SwissprotQ7X7422e-45ILI1_ORYSJ; Transcription factor ILI1
TrEMBLA0A0D9WA703e-46A0A0D9WA70_9ORYZ; Uncharacterized protein
STRINGLPERR04G22650.15e-47(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122932837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39860.13e-24bHLH family protein