PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539256.1_FGP007

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

SBP

Protein Properties

Length: 127aa MW: 14068.6 Da PI: 6.8919

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539256.1_FGP007	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	44.3	4.8e-14	37	67	48	78
SEEETTT--SS--S-STTTT-------S--- CS SBP 48 rfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh l+efD++k+sCr+rLa+h +rrrk+++ KN539256.1_FGP007 37 RFHLLDEFDDAKKSCRKRLADHHHRRRKSKP 67 9***************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	12.246	1	65	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.94E-11	29	69	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-7	37	64	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	1.9E-4	37	52	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MHLRENRNLL QYGTPYGNTP YESAAKLQAV SGMEQFRFHL LDEFDDAKKS CRKRLADHHH 60 RRRKSKPSDG EHSEAGSSSK NAGIGDGFET QLLGGAHMSK DQDQAMDLGE VVKEAVDPKV 120 FLVGEAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	60	65	RRRKSK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}.
UniProt	Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000269\|PubMed:17594063}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539256.1_FGP007

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL442117	2e-66	AL442117.1 Oryza sativa genomic DNA, chromosome X, BAC clone: H0421H08, complete sequence.
GenBank	AL606685	2e-66	AL606685.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence.
GenBank	AP014960	2e-66	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	2e-66	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855135	2e-66	CR855135.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0158D24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634037.1	2e-44	squamosa promoter-binding-like protein 8
Swissprot	Q01KM7	2e-45	SPL8_ORYSI; Squamosa promoter-binding-like protein 8
Swissprot	Q7XPY1	2e-45	SPL8_ORYSJ; Squamosa promoter-binding-like protein 8
TrEMBL	A3AY69	5e-50	A3AY69_ORYSJ; Uncharacterized protein
STRING	OGLUM04G27880.1	7e-44	(Oryza glumipatula)
STRING	ORUFI04G29620.1	7e-44	(Oryza rufipogon)
STRING	OS04T0656500-01	9e-44	(Oryza sativa)
STRING	ONIVA04G26660.1	6e-44	(Oryza nivara)
STRING	ORGLA04G0242500.1	7e-44	(Oryza glaberrima)
STRING	OBART04G27990.1	7e-44	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6990	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	1e-10	squamosa promoter binding protein-like 8

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]