PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539264.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 160aa    MW: 16817.5 Da    PI: 4.286
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539264.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.31.1e-101543129
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIar 29
                       +g+WT+eEd++l+ +++q+G g+W++ + 
  KN539264.1_FGP002 15 KGPWTPEEDQKLLSYIEQHGHGCWRSLPT 43
                       79**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-13744IPR009057Homeodomain-like
PROSITE profilePS500907.6311060IPR017877Myb-like domain
SuperFamilySSF466891.33E-81260IPR009057Homeodomain-like
PfamPF002499.1E-91542IPR001005SANT/Myb domain
CDDcd001672.24E-71753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGRSPCCEKE AGLKKGPWTP EEDQKLLSYI EQHGHGCWRS LPTKAVQAVQ SSYGEACQEH  60
HFGGATAEAS FAGAGTLAGV LLDCSVTGAD QRFAARTEAC SGELQGEDDD DKGYWNSILN  120
MVNSSMSSSS SSLTSEVVTD TEMFLPATAA AAASATPVEF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539264.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061610.0AP006161.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1267B06.
GenBankAP0149580.0AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126100.0CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015624862.15e-54transcription factor MYB106
TrEMBLA0A0E0CMG13e-53A0A0E0CMG1_9ORYZ; Uncharacterized protein
STRINGOMERI02G20550.12e-54(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-21myb domain protein 16