PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539264.1_FGP008
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 270aa    MW: 30107.1 Da    PI: 7.3602
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539264.1_FGP008genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1739e-54201461128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+++yL +k+++    +++++ e+d++k+ePwdLp++++ +ekewyfF+ +d+ky+tg r+nrat+sgyWkatgkd+e+
  KN539264.1_FGP008  20 LPPGFRFHPTDEELITHYLLRKAADPAGFAARAVGEADLNKCEPWDLPSRATMGEKEWYFFCVKDRKYPTGLRTNRATESGYWKATGKDREI 111
                        79*********************9999666689***************988899************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++ +++lvg+kktLvfy+grap+g kt Wvmheyr+
  KN539264.1_FGP008 112 FR-GKALVGMKKTLVFYTGRAPRGGKTGWVMHEYRI 146
                        **.99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-599153IPR003441NAC domain
PROSITE profilePS5100552.85120166IPR003441NAC domain
PfamPF023651.4E-2921146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEHDVHRHRQ MMQQQQEMDL PPGFRFHPTD EELITHYLLR KAADPAGFAA RAVGEADLNK  60
CEPWDLPSRA TMGEKEWYFF CVKDRKYPTG LRTNRATESG YWKATGKDRE IFRGKALVGM  120
KKTLVFYTGR APRGGKTGWV MHEYRIHGKH AAANSKGQFL DTPYLLPAAD PADHLAMSSA  180
SPFLEALQMQ YVQDAAAAAG GAGMVHELLM GGGWYCNKGE RERLSGASQD TGLTSSEMLM  240
FGAPNTDTNP VKSHSCLMQN SWYLAADLSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-5091464140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539264.1_FGP008
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281800.0AB028180.1 Oryza sativa mRNA for OsNAC1 protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623390.11e-105NAC domain-containing protein 92 isoform X2
SwissprotQ9FLJ27e-78NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A0E0CMF91e-151A0A0E0CMF9_9ORYZ; Uncharacterized protein
STRINGOB02G29280.11e-126(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27303787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07680.12e-79NAC domain containing protein 80
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]