PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539266.1_FGP006
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family TALE
Protein Properties Length: 143aa    MW: 16910.2 Da    PI: 9.6029
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539266.1_FGP006genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.6e-08831261454
                        HHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  14 eLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +L++  +   k +yp+++++++L +++gL+ +q+ +WF N+R +
  KN539266.1_FGP006  83 ILKQWWQqhsKWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 126
                        5555555222469*****************************87 PP
2ELK26.91.1e-094768122
                ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                       ELK +L++++++++ ++++E++
  KN539266.1_FGP006 47 ELKIELKQGFKSRIEDVREEIL 68
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.1324767IPR005539ELK domain
PROSITE profilePS5007111.69367130IPR001356Homeobox domain
SuperFamilySSF466891.2E-1669134IPR009057Homeodomain-like
SMARTSM003894.9E-1069134IPR001356Homeobox domain
CDDcd000862.49E-1070131No hitNo description
Gene3DG3DSA:1.10.10.601.0E-2574133IPR009057Homeodomain-like
PfamPF059203.0E-1887126IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSEDEEETAP MLEGPMDMGS DGHDLMGFGP LMPTDSERSL MERVRQELKI ELKQGFKSRI  60
EDVREEILRK RRAGKLPGDT TTILKQWWQQ HSKWPYPTED DKAKLVEETG LQLKQINNWF  120
INQRKRNWHN NSQTSTLKSK RKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A1e-1370126864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123142RKRNWHNNSQTSTLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539266.1_FGP006
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076290.0AB007629.1 Oryza sativa Japonica Group HOS66 mRNA, partial cds.
GenBankAB0618190.0AB061819.1 Oryza sativa Japonica Group HOS66 mRNA for KNOX family class 2 homeodomain protein, complete cds.
GenBankAK0603160.0AK060316.1 Oryza sativa Japonica Group cDNA clone:001-007-E04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628919.11e-102homeobox protein knotted-1-like 3
SwissprotQ94LW31e-103KNOS3_ORYSJ; Homeobox protein knotted-1-like 3
TrEMBLA0A0D9Z1E31e-102A0A0D9Z1E3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0CUF11e-102A0A0E0CUF1_9ORYZ; Uncharacterized protein
STRINGOGLUM03G01790.11e-102(Oryza glumipatula)
STRINGOMERI03G01740.21e-102(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-82KNOTTED-like homeobox of Arabidopsis thaliana 7