PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539267.1_FGP013

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 156aa MW: 17747.6 Da PI: 8.7627

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539267.1_FGP013	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	38.9	1.5e-12	62	91	27	56
HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 27 aeereeLAkklgLterqVkvWFqNrRakek 56 +++ LAk+l+L rqV vWFqNrRa+ k KN539267.1_FGP013 62 PKQKVALAKSLNLRPRQVEVWFQNRRARTK 91 678999**********************98 PP
2	HD-ZIP_I/II	78.2	1.4e-25	61	125	25	86
HD-ZIP_I/II 25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkrayd...alkeenerLekevee 86 +p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr+++ +l+ +++r++ ve+ KN539267.1_FGP013 61 SPKQKVALAKSLNLRPRQVEVWFQNRRARTKLKQTEVDCEHLKRWIKckvNLVFDKCRIDPSVES 125 69*****************************************9875222455666666665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00389	0.0033	39	97	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	9.7E-12	61	91	IPR009057	Homeodomain-like
CDD	cd00086	1.18E-8	61	94	No hit	No description
SuperFamily	SSF46689	1.15E-10	61	101	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.293	61	93	IPR001356	Homeobox domain
Pfam	PF00046	6.0E-10	62	91	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	68	91	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MERQGLDLGL SLGLGLTTAA TWPAAGFCLN SGMAEQEVIR RDDVVAAAVA EDERFACSPG 60 SPKQKVALAK SLNLRPRQVE VWFQNRRART KLKQTEVDCE HLKRWIKCKV NLVFDKCRID 120 PSVESLVVSK HKWELNQLLT VHLDWELVYR LVSYVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	85	93	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539267.1_FGP013

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012614	1e-96	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBank	CT830896	1e-96	CT830896.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN014L20, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642539.1	2e-39	homeobox-leucine zipper protein HOX28
Swissprot	A2Y931	2e-40	HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
Swissprot	Q5VPE5	2e-40	HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBL	A0A0D3GCK9	2e-41	A0A0D3GCK9_9ORYZ; Uncharacterized protein
STRING	OBART06G02540.1	4e-42	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3842	33	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	2e-22	homeobox from Arabidopsis thaliana

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]