PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539267.1_FGP019
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 143aa    MW: 15590.4 Da    PI: 8.4854
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539267.1_FGP019genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.57.2e-0672844456
                       HHHHHHHHHHHHH CS
           Homeobox 44 VkvWFqNrRakek 56
                       V vWFqNrRa+ k
  KN539267.1_FGP019 72 VEVWFQNRRARTK 84
                       99*********98 PP
2HD-ZIP_I/II63.17e-21721204392
        HD-ZIP_I/II  43 vavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        v+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rLeke ++Lr +lk
  KN539267.1_FGP019  72 VEVWFQNRRARTKLKQTEVDCEYLKRWCERLADENKRLEKELADLR-ALK 120
                        8********************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-94495IPR009057Homeodomain-like
SMARTSM003890.00884490IPR001356Homeobox domain
CDDcd000867.53E-44687No hitNo description
Gene3DG3DSA:1.10.10.601.6E-46590IPR009057Homeodomain-like
SMARTSM003401.6E-2086129IPR003106Leucine zipper, homeobox-associated
PfamPF021834.4E-1086120IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MYQGRASTSP DSAAALSSAS GKRERELERS GSGVDDDDGA DGAGGRKKLR LSKDQAAVLE  60
ECFKTHSTLN PVEVWFQNRR ARTKLKQTEV DCEYLKRWCE RLADENKRLE KELADLRALK  120
AAPSPASASA MQPSSSAAAT LTM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17886RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
UniProtProbable transcription factor that binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. {ECO:0000269|PubMed:10732669}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539267.1_FGP019
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1457261e-118AF145726.1 Oryza sativa homeodomain leucine zipper protein (Oshox2) mRNA, partial cds.
GenBankAK1051501e-118AK105150.1 Oryza sativa Japonica Group cDNA clone:001-103-D07, full insert sequence.
GenBankAP0037081e-118AP003708.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0041F13.
GenBankAP0149621e-118AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankAY2068641e-118AY206864.1 Oryza sativa (indica cultivar-group) homeodomain leucine zipper protein (Hox2) mRNA, complete cds.
GenBankCP0126141e-118CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004964497.17e-66homeobox-leucine zipper protein HOX2
SwissprotQ5VPE31e-64HOX2_ORYSJ; Homeobox-leucine zipper protein HOX2
SwissprotQ84U861e-64HOX2_ORYSI; Homeobox-leucine zipper protein HOX2
TrEMBLA0A0E0DWL31e-67A0A0E0DWL3_9ORYZ; Uncharacterized protein
STRINGOMERI06G02730.12e-68(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60390.15e-35homeobox-leucine zipper protein 3
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]