PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539273.1_FGP005
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 67aa    MW: 7632.02 Da    PI: 9.2156
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539273.1_FGP005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM621.9e-19956149
                NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk 49
                       lppGfrF+Ptdeelvv+yL++kv++++l++  +i+evd+yk++PwdLp 
  KN539273.1_FGP005  9 LPPGFRFRPTDEELVVHYLCRKVARQPLPV-PIIAEVDLYKLDPWDLPV 56
                       79****************************.88**************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-21558IPR003441NAC domain
PROSITE profilePS5100521.649967IPR003441NAC domain
PfamPF023658.4E-91052IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 67 aa     Download sequence    Send to blast
METTAAKKLP PGFRFRPTDE ELVVHYLCRK VARQPLPVPI IAEVDLYKLD PWDLPVPHAP  60
GARPKFV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-23266872Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539273.1_FGP005
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281832e-56AB028183.1 Oryza sativa mRNA for OsNAC4 protein, complete cds.
GenBankAK0738482e-56AK073848.1 Oryza sativa Japonica Group cDNA clone:J033069M07, full insert sequence.
GenBankAP0034112e-56AP003411.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1148D12.
GenBankAP0043312e-56AP004331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0085D07.
GenBankAP0149572e-56AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY9865042e-56AY986504.1 Oryza sativa (japonica cultivar-group) NAC protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623706.12e-25NAC domain-containing protein 68
SwissprotQ52QH42e-26NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A0D3EVF74e-24A0A0D3EVF7_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9V7383e-24A0A0D9V738_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YGF94e-24A0A0D9YGF9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FUW14e-24A0A0E0FUW1_ORYNI; Uncharacterized protein
TrEMBLA0A0E0N4264e-24A0A0E0N426_ORYRU; Uncharacterized protein
TrEMBLA2WWC14e-24A2WWC1_ORYSI; Uncharacterized protein
TrEMBLA2ZYY93e-24A2ZYY9_ORYSJ; Uncharacterized protein
TrEMBLI1NSP45e-24I1NSP4_ORYGL; Uncharacterized protein
STRINGOGLUM01G39020.16e-25(Oryza glumipatula)
STRINGORUFI01G38320.17e-25(Oryza rufipogon)
STRINGOS01T0816100-018e-25(Oryza sativa)
STRINGONIVA01G39980.17e-25(Oryza nivara)
STRINGORGLA01G0288400.18e-25(Oryza glaberrima)
STRINGOBART01G35010.17e-25(Oryza barthii)
STRINGLPERR01G30200.15e-25(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP148451121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-23NAC domain containing protein 32
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]