PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539283.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 218aa    MW: 23382.6 Da    PI: 10.0892
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539283.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.8e-321972255
            G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                       prlrWtp+LH++Fv+a+++LGG++kAtPk++l+lm+v gLt++hvkSHLQ+YR 
  KN539283.1_FGP004 19 PRLRWTPDLHHCFVHAIHKLGGQHKATPKRVLQLMGVGGLTISHVKSHLQMYRN 72
                       8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8941575IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.3E-311574IPR009057Homeodomain-like
SuperFamilySSF466898.96E-161773IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-241972IPR006447Myb domain, plants
PfamPF002493.1E-102071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MVRRERIEGV RQYNRSKVPR LRWTPDLHHC FVHAIHKLGG QHKATPKRVL QLMGVGGLTI  60
SHVKSHLQMY RNMRNDDLGM QVRHTMPLLI KTCKGLTSAA TPPPAAATAA KEHKATPPPE  120
NGAIRHGRKA RRTTAAAEEE ERDGDGDGDE LSLSLTLDSG LSCRSSAGAG AYCCSEGSSS  180
NNGLISTPSP TTSLVAGGCS RRSTPAMLSN VVSLDLSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-182074357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539283.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126181e-143CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876554.15e-56uncharacterized protein LOC112936623 isoform X1
RefseqXP_025876555.16e-56uncharacterized protein LOC112936623 isoform X2
TrEMBLA0A0E0IVT41e-110A0A0E0IVT4_ORYNI; Uncharacterized protein
STRINGONIVA10G19340.11e-111(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP76102950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.19e-31G2-like family protein