PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539305.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 248aa    MW: 27748.9 Da    PI: 7.5488
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539305.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.84.5e-1486133355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        ++h + ErrRR+++N+ f  L++l+P+ +      K++Ka+iL +++ Y+k+L+
  KN539305.1_FGP004  86 KNHVMSERRRREKLNEMFLILKSLVPSiD------KVDKASILSETIAYLKELE 133
                        5899***********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.96783132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.37E-1586137No hitNo description
PfamPF000101.4E-1187133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-1787143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.26E-1887149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-1689138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEIDDDVIYS LIRNWDNDSS SSWIELLDHV VVSPASCFVP WKRTELDKEA VATGGGGREA  60
AQRLLKKALG GGGAWMNRAA GSCSIKNHVM SERRRREKLN EMFLILKSLV PSIDKVDKAS  120
ILSETIAYLK ELERRVQELE SGKKVSRPPK RKPCSETIIG GGDAGAVKEH YHWVLSESQE  180
GTPSDVRVIV MDEDELHLEV HCRWKELMMT RVFDAIKSLR LDILSVQSSV PDGLLGLKIR  240
AKVVSLTQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-1287143864Transcription factor MYC2
5gnj_B2e-1287143864Transcription factor MYC2
5gnj_E2e-1287143864Transcription factor MYC2
5gnj_F2e-1287143864Transcription factor MYC2
5gnj_G2e-1287143864Transcription factor MYC2
5gnj_I2e-1287143864Transcription factor MYC2
5gnj_M2e-1287143864Transcription factor MYC2
5gnj_N2e-1287143864Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19196ERRRRE
29297RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539305.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638330.11e-153anthocyanin regulatory R-S protein
SwissprotP130273e-55ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBLB8AAP51e-160B8AAP5_ORYSI; Uncharacterized protein
STRINGOS01T0576100-001e-159(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.14e-28bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Perrot GH,Cone KC
    Nucleotide sequence of the maize R-S gene.
    Nucleic Acids Res., 1989. 17(19): p. 8003
    [PMID:2798145]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]