PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539306.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 259aa    MW: 29855.6 Da    PI: 7.6345
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539306.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.43.1e-12136177351
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 
                         +GV++  k+ +W A I++      +k+++lg+ gt eeAa+++++a+ 
  KN539306.1_FGP004 136 MRGVYF--KNMKWQAAIKVD-----KKQIHLGTVGTQEEAARLYDRAAF 177
                        79**98..47*********4.....5********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510329.269111190IPR001471AP2/ERF domain
PfamPF008472.3E-6135178IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-8135180IPR016177DNA-binding domain
SMARTSM003806.1E-5135192IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-7138182IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MLCHTEGHFF GGMFELAYSP TQEGYRKCQR QVFWYSLLKL HVTLEVFQQE GWKDSLPVDF  60
PKPSDNENSV EVAHPNIKPF SVHPLPLTKN SDVLLESSNG SDSLKEEKNH YYPGKEIKRR  120
KRHRRKQYVD QEPCIMRGVY FKNMKWQAAI KVDKKQIHLG TVGTQEEAAR LYDRAAFMCG  180
REPNFELSEE EKKELQNYTW KDFLDMTRDT ITSKKQRKVG LIRRNKTDSL IGQGDGDTEM  240
INGGGSSHSE DGDAETSAS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539306.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0671560.0AK067156.1 Oryza sativa Japonica Group cDNA clone:J013098A10, full insert sequence.
GenBankCT8296430.0CT829643.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA114K05, full insert sequence.
GenBankCT8417250.0CT841725.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C105I17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626905.11e-153ethylene-responsive transcription factor-like protein At4g13040
RefseqXP_015626906.11e-153ethylene-responsive transcription factor-like protein At4g13040
TrEMBLA0A0D3F5F11e-151A0A0D3F5F1_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YSK41e-151A0A0D9YSK4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0G6W61e-152A0A0E0G6W6_ORYNI; Uncharacterized protein
TrEMBLA0A0E0NF711e-151A0A0E0NF71_ORYRU; Uncharacterized protein
STRINGOGLUM02G17700.11e-152(Oryza glumipatula)
STRINGORUFI02G18290.11e-152(Oryza rufipogon)
STRINGOBART02G17450.11e-152(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75163545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13040.22e-45ERF family protein