PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539311.1_FGP012
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 260aa    MW: 29074.8 Da    PI: 7.1441
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539311.1_FGP012genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM104.31.5e-3271241128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGf+F P+deelvv++L++kv+  +++  ++i+++  ++++Pw+L+ k+ +  ++wyfF++  +        +r+ ++g W+  g d++v
  KN539311.1_FGP012   7 LPPGFHFFPSDEELVVHFLRRKVSLLPCHP-DIIPTLLPHRYNPWELNGKALQAGNQWYFFCHLTQ--------SRTSSNGHWSPIGADETV 89 
                        79*************************999.89**************966667789******9855........577789************ PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                         s +g++vglkktL f  g+ ++g +t+W+mhey+l
  KN539311.1_FGP012  90 RS-GGRNVGLKKTLLFSIGEPSEGIRTNWIMHEYHL 124
                        *9.99*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-444167IPR003441NAC domain
PROSITE profilePS5100540.6987168IPR003441NAC domain
PfamPF023651.8E-208124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGGATNLPPG FHFFPSDEEL VVHFLRRKVS LLPCHPDIIP TLLPHRYNPW ELNGKALQAG  60
NQWYFFCHLT QSRTSSNGHW SPIGADETVR SGGRNVGLKK TLLFSIGEPS EGIRTNWIMH  120
EYHLLDGDCV AGGSSNLTSS SSNRKSHRKR GHSSMESNNW VLCRVFESSC GSQVSFHGEG  180
TELSCLDEVF LSLDDYDELL ATSNYLRICM DIVFYPQRKK EGGWSLRDHM AIYAVNGNHA  240
CLCGNRAQMN SSNLPTPVIM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-32617316170NO APICAL MERISTEM PROTEIN
1ut4_B5e-32617316170NO APICAL MERISTEM PROTEIN
1ut7_A5e-32617316170NO APICAL MERISTEM PROTEIN
1ut7_B5e-32617316170NO APICAL MERISTEM PROTEIN
3swm_A4e-32617319173NAC domain-containing protein 19
3swm_B4e-32617319173NAC domain-containing protein 19
3swm_C4e-32617319173NAC domain-containing protein 19
3swm_D4e-32617319173NAC domain-containing protein 19
3swp_A4e-32617319173NAC domain-containing protein 19
3swp_B4e-32617319173NAC domain-containing protein 19
3swp_C4e-32617319173NAC domain-containing protein 19
3swp_D4e-32617319173NAC domain-containing protein 19
4dul_A5e-32617316170NAC domain-containing protein 19
4dul_B5e-32617316170NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539311.1_FGP012
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8313770.0CT831377.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRN119H17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015626053.11e-145NAC domain-containing protein 104
SwissprotQ8GWK64e-58NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A0E0G8651e-145A0A0E0G865_ORYNI; Uncharacterized protein
STRINGONIVA02G22460.11e-145(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36673679
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.17e-59xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]