PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539317.1_FGP003

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 237aa MW: 25134.8 Da PI: 8.6932

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539317.1_FGP003	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.8	7.5e-31	26	79	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt eLH +Fv+a+e LGG++kAtPk il+lm+vkgLt++hvkSHLQ+YR KN539317.1_FGP003 26 PRLRWTGELHCSFVQAIEFLGGQDKATPKLILQLMGVKGLTISHVKSHLQMYRC 79 8****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-29	22	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.85E-16	24	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-23	26	79	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-6	27	78	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MGSGGGGGGG CGRNGAVRQY IRSKVPRLRW TGELHCSFVQ AIEFLGGQDK ATPKLILQLM 60 GVKGLTISHV KSHLQMYRCS RLGSHGTGRR SEMQPQLQRK HSCGADEQVP REFLCPPLKS 120 KENDFQQGQV LIIKPEVHHL GPVLKLQCSK VESSGFISSS TGTAARDQPD PPPPEKCSLS 180 LSLGPDPKCM PAIASSPSES SCILSSSSRS FSDCSGNSGC LVAPGVNLEL SMSICGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	27	81	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	27	81	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	27	81	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	27	81	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539317.1_FGP003

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK101849	0.0	AK101849.1 Oryza sativa Japonica Group cDNA clone:J033069K05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634437.1	1e-68	putative Myb family transcription factor At1g14600
TrEMBL	A0A0E0DHA1	2e-67	A0A0E0DHA1_9ORYZ; Uncharacterized protein
STRING	OMERI04G17730.1	3e-68	(Oryza meridionalis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-29	G2-like family protein