PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539317.1_FGP005

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 387aa MW: 42017.5 Da PI: 9.6807

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539317.1_FGP005	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.9	8.6e-06	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H KN539317.1_FGP005 43 FVCEVCNKGFQREQNLQLHRRGH 65 89*******************88 PP
2	zf-C2H2	12.3	0.00052	120	142	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + KN539317.1_FGP005 120 WKCDKCSKRYAVQSDWKAHSKIC 142 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	4.9E-6	42	65	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.33E-7	42	65	No hit	No description
Pfam	PF12171	2.3E-5	43	65	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.0041	43	65	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.094	43	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	2.1E-4	108	141	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.33E-7	115	140	No hit	No description
SMART	SM00355	140	120	140	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MGIVPYISQD KTKSVHFSRF HASDPDAEVI ALSPKTLLAT NRFVCEVCNK GFQREQNLQL 60 HRRGHNLPWK LKQKNPLQAQ RRRVYLCPEP TCVHHDPARA LGDLTGIKKH FCRKHGEKKW 120 KCDKCSKRYA VQSDWKAHSK ICGTREYRCD CGTLFSRLSH GLSDRFIRSP ACWMCSAKPF 180 HGLMQLPDLQ GNGAGGPGAP GPNLFNLGFF ANNGNSSGSS HEHASQGLMS NDQFSGGAGG 240 GGGSDASAAG IFGGNFVGGD HVSPAGLYND QAAMLPQMSA TALLQKAAQM GATSSANGPG 300 SMFRGFVGSS PHMRPAAQHM DQSDAHLNDL MNSLAGGGVN AAAMRHRPRH VDAERRPPPE 360 QQRHELLGGR DEVRIVLQRE KDAMNPP

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MGIVPYISQD KTKSVHFSRF HASDPDAEVI ALSPKTLLAT NRFVCEVCNK GFQREQNLQL  60
HRRGHNLPWK LKQKNPLQAQ RRRVYLCPEP TCVHHDPARA LGDLTGIKKH FCRKHGEKKW  120
KCDKCSKRYA VQSDWKAHSK ICGTREYRCD CGTLFSRLSH GLSDRFIRSP ACWMCSAKPF  180
HGLMQLPDLQ GNGAGGPGAP GPNLFNLGFF ANNGNSSGSS HEHASQGLMS NDQFSGGAGG  240
GGGSDASAAG IFGGNFVGGD HVSPAGLYND QAAMLPQMSA TALLQKAAQM GATSSANGPG  300
SMFRGFVGSS PHMRPAAQHM DQSDAHLNDL MNSLAGGGVN AAAMRHRPRH VDAERRPPPE  360
QQRHELLGGR DEVRIVLQRE KDAMNPP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-21	116	165	3	52	Zinc finger protein JACKDAW
5b3h_F	1e-21	116	165	3	52	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539317.1_FGP005

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015691544.1	0.0	PREDICTED: protein indeterminate-domain 13-like
Swissprot	O22759	3e-85	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A0D3FZ12	0.0	A0A0D3FZ12_9ORYZ; Uncharacterized protein
STRING	OBART04G21910.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	9e-87	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]