PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539318.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 129aa    MW: 14719.3 Da    PI: 10.1762
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539318.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08701061147
                        HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        l++++  ++G g+W+ I+r    +Rt+ q+ s+ qky
  KN539318.1_FGP001  70 LFLEGLDRYGRGDWRNISRFSVRTRTPTQVASHAQKY 106
                        89**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001677.51E-670107No hitNo description
PfamPF002491.5E-570106IPR001005SANT/Myb domain
TIGRFAMsTIGR015579.1E-1170110IPR006447Myb domain, plants
SuperFamilySSF466895.64E-1170111IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-570105IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
MNDDGKNRTL QEHSSAAAHR IARFGETNPQ KAGEKRGETR RFQSECAWVD ALSMNDDSFT  60
LGEDYLKLSL FLEGLDRYGR GDWRNISRFS VRTRTPTQVA SHAQKYFIRQ ANAGARDSKR  120
KSIHDITTP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539318.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1115716e-98AK111571.1 Oryza sativa Japonica Group cDNA clone:J013071A13, full insert sequence.
GenBankAP0036116e-98AP003611.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0423B08.
GenBankAP0149576e-98AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankCP0126096e-98CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLJ3L6384e-36J3L638_ORYBR; Uncharacterized protein
STRINGOB01G46940.17e-37(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-24Homeodomain-like transcriptional regulator