PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539318.1_FGP004

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 257aa MW: 28305.5 Da PI: 5.1885

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539318.1_FGP004	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.3	4e-42	9	143	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk........kvka..eekewyfFskrdkkyatgkrknratksgyW 83 +pGfrF Pt+eel+++yL++k++g + ++e+vi+ +d+y+v+P +L + + e + w++F++r++++a+g r++r+t sgyW KN539318.1_FGP004 9 APGFRFYPTEEELICFYLRNKLDGLRDDIERVIPVFDVYSVDPLQLSEihhemlggG--GgeEGEPWFYFCPRQEREARGGRPSRTTPSGYW 98 59*************************99***********85456554432..1335669********************** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ka g+ v+s++++ +g+kkt+vfy+grap+g+kt W m+eyr+ KN539318.1_FGP004 99 KAAGTPGVVYSADRRPIGMKKTMVFYRGRAPSGTKTAWKMNEYRA 143 *****************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	44.317	8	182	IPR003441	NAC domain
SuperFamily	SSF101941	7.85E-46	9	181	IPR003441	NAC domain
Pfam	PF02365	1.0E-23	10	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MADGGGRRAP GFRFYPTEEE LICFYLRNKL DGLRDDIERV IPVFDVYSVD PLQLSEIHHE 60 MLGGGGGEEG EPWFYFCPRQ EREARGGRPS RTTPSGYWKA AGTPGVVYSA DRRPIGMKKT 120 MVFYRGRAPS GTKTAWKMNE YRAFHYPDAS SASASSAGAA APPSHLPPQL RSEFSLCRLY 180 TRSGGIRQFD RRPLAGGGDE NPGPSMAAAA ASPEENDGSG SSMQQLELMD QGGAVDPDWD 240 QWDDLATLTA LLYWPRD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-27	10	142	19	141	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-27	10	142	19	141	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-27	10	142	19	141	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-27	10	142	19	141	NO APICAL MERISTEM PROTEIN
3swm_A	6e-27	10	188	22	174	NAC domain-containing protein 19
3swm_B	6e-27	10	188	22	174	NAC domain-containing protein 19
3swm_C	6e-27	10	188	22	174	NAC domain-containing protein 19
3swm_D	6e-27	10	188	22	174	NAC domain-containing protein 19
3swp_A	6e-27	10	188	22	174	NAC domain-containing protein 19
3swp_B	6e-27	10	188	22	174	NAC domain-containing protein 19
3swp_C	6e-27	10	188	22	174	NAC domain-containing protein 19
3swp_D	6e-27	10	188	22	174	NAC domain-containing protein 19
4dul_A	6e-27	10	142	19	141	NAC domain-containing protein 19
4dul_B	6e-27	10	142	19	141	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539318.1_FGP004

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK071274	0.0	AK071274.1 Oryza sativa Japonica Group cDNA clone:J023087C18, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015632691.1	1e-167	NAC domain-containing protein 90 isoform X2
Swissprot	Q9FMR3	2e-63	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D3EWL8	1e-165	A0A0D3EWL8_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0N5E4	1e-165	A0A0E0N5E4_ORYRU; Uncharacterized protein
TrEMBL	A2WX86	1e-165	A2WX86_ORYSI; Uncharacterized protein
TrEMBL	I1NTL2	1e-165	I1NTL2_ORYGL; Uncharacterized protein
TrEMBL	Q94CW0	1e-165	Q94CW0_ORYSJ; NAC transcription factor-like protein
STRING	ORUFI01G41540.1	1e-166	(Oryza rufipogon)
STRING	OS01T0862800-01	1e-166	(Oryza sativa)
STRING	ORGLA01G0320200.1	1e-166	(Oryza glaberrima)
STRING	OBART01G38190.1	1e-166	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-62	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]