PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539331.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 412aa    MW: 45484.2 Da    PI: 6.9263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539331.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.50.000144795555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       + +r rrR  +++ ++e Lr+l+P    ++++     e L +A +YI +Lq
  KN539331.1_FGP002 47 KEMRRRRRCVEVRRKMEALRRLVPGG--GGAGEDGGEELLFRAADYIAMLQ 95
                       55677777789**************5..49999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.5884294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-748118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF504941.03E-1797229IPR009003Peptidase S1, PA clan
Gene3DG3DSA:2.40.10.103.9E-4123212No hitNo description
SuperFamilySSF504945.4E-18260396IPR009003Peptidase S1, PA clan
Gene3DG3DSA:2.40.10.104.2E-4290378No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MVAQATINNG RCDAAAAAAK SRPVVMPPAT ARSNHGAVAC KNSGSNKEMR RRRRCVEVRR  60
KMEALRRLVP GGGGAGEDGG EELLFRAADY IAMLQVQLQV HLPDKSIVQG RLRFMNRHYN  120
LSILEITSEL PLQVPAFGSA PKYGQEILAL SRDENMSLVA RRGAITWSDG SFMWRNHYMF  180
VDCDVPEGGE GGPVVGTGGS TIGMVYIDGP GAVIISISII CTFFEMWKQF RELDEQNWDG  240
ATKCAMILTL FTYFKKKPHE PQPELQVHLP DKSIVQGRLR FMNRHYNLSI LEITSELPLQ  300
VPAFGSAPKY GQEILALSRD ENMSLVARRG AITWSDGSLM WRNHYMFVDC DVPEGGEGGP  360
VVGTGGSTIG MVYIDGPGAV IISISIICTF FEMWKQFREL DEQNSAALMN SD
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539331.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1012180.0AK101218.1 Oryza sativa Japonica Group cDNA clone:J033031C13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640853.11e-101putative protease Do-like 14
TrEMBLA0A0D3G3H41e-108A0A0D3G3H4_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DMC11e-104A0A0E0DMC1_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0DMC81e-104A0A0E0DMC8_9ORYZ; Uncharacterized protein
STRINGOMERI05G03900.11e-104(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91112126