PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539340.1_FGP011

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 191aa MW: 20678.1 Da PI: 5.863

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539340.1_FGP011	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6e-06	83	118	14	54
HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ +++ L++l+ + +K + a++L +A+eYIk L KN539340.1_FGP011 83 EKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 118 67779999999999998.....8****************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.265	69	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0035	80	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.1E-11	80	133	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.49E-6	81	123	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-9	83	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MAASTRPFRA QPTAADEAVM TNPFRDMGVG QGLLLDQASE PLHGLSFDAE EPAVAPATHS 60 ITASFGDYQH SASYDAAAAV RKEKLGDRIT ALQQLVSPFG KTDTASVLHE AIEYIKFLHE 120 QVASLSSPYL KNGNPLQHFQ QTKGSESTKD TEPKPDLRSR GLCLVPVAST YTVASETVPE 180 FWHPTFGGTF R

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539340.1_FGP011

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012609	1e-120	CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633446.1	4e-71	transcription factor bHLH123
Swissprot	Q8GXT3	5e-45	BH123_ARATH; Transcription factor bHLH123
TrEMBL	J3L4R7	8e-86	J3L4R7_ORYBR; Uncharacterized protein
STRING	OB01G42230.1	1e-86	(Oryza brachyantha)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2970	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	2e-47	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]