PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539349.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 149aa    MW: 16953.1 Da    PI: 9.7717
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539349.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1054.1e-3370128159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                        ldDgy+WrKYGqK vk+s++prsYYrCt+++C+vkk+v+r a+d+++v++tYeg Hnh+
  KN539349.1_FGP001  70 LDDGYRWRKYGQKAVKNSKHPRSYYRCTHHTCNVKKQVQRLAKDTSIVVTTYEGVHNHP 128
                        59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-3456128IPR003657WRKY domain
SuperFamilySSF1182902.88E-2962129IPR003657WRKY domain
PROSITE profilePS5081128.88565130IPR003657WRKY domain
SMARTSM007741.1E-3870129IPR003657WRKY domain
PfamPF031061.5E-2671128IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MENLQLQGDD HDDEALPHFP YFAAAESSGA AGNKEKQVME KGGAGRPSGT KKKASRPRFA  60
FQTRSDNDIL DDGYRWRKYG QKAVKNSKHP RSYYRCTHHT CNVKKQVQRL AKDTSIVVTT  120
YEGVHNHPCE KLMEALTPIL KQLQFLSQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-2660127774Probable WRKY transcription factor 4
2lex_A9e-2660127774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539349.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1089090.0AK108909.1 Oryza sativa Japonica Group cDNA clone:002-152-G06, full insert sequence.
GenBankAY3418450.0AY341845.1 Oryza sativa (japonica cultivar-group) WRKY4 mRNA, complete cds.
GenBankAY8706070.0AY870607.1 Oryza sativa (japonica cultivar-group) WRKY23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876574.15e-86probable WRKY transcription factor 24
SwissprotQ9FFS39e-57WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A0D3ETQ01e-84A0A0D3ETQ0_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9YEL51e-84A0A0D9YEL5_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0FSR71e-84A0A0E0FSR7_ORYNI; Uncharacterized protein
TrEMBLB8A9211e-84B8A921_ORYSI; Uncharacterized protein
TrEMBLI1NRG71e-84I1NRG7_ORYGL; Uncharacterized protein
TrEMBLQ942D21e-84Q942D2_ORYSJ; Os01g0734000 protein
STRINGOGLUM01G34020.12e-85(Oryza glumipatula)
STRINGOS01T0734000-012e-85(Oryza sativa)
STRINGONIVA01G34250.12e-85(Oryza nivara)
STRINGORGLA01G0245700.12e-85(Oryza glaberrima)
STRINGOBART01G29960.12e-85(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.14e-59WRKY DNA-binding protein 24