PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539351.1_FGP002
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 311aa    MW: 34060.2 Da    PI: 5.2292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539351.1_FGP002genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44e-11146193355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + h ++Er+RR+++ + f  L +++P +     kK +K++ L  +++Y+k+L+
  KN539351.1_FGP002 146 QEHVIAERKRREKLQQQFVALATIVPGL-----KKTDKISLLGSTIDYVKQLE 193
                        5799************************.....9*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.456143192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-9146193IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-14147208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15147206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-10148197No hitNo description
SMARTSM003533.2E-11149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MDEQNQWLTE PEPEELTYMY HQEEHARMQE QFAGTPLVEQ PVRFDQFYPA SMAPNQFHPS  60
HCSSFPAFGG SSALPSLAFG AVAMTTKKEQ VQQPSPSSSN VLSFAGQVQG SSTTLDFSGR  120
GWQQDDGVGV FQQPPERRSR PPANAQEHVI AERKRREKLQ QQFVALATIV PGLKKTDKIS  180
LLGSTIDYVK QLEEKVKALE EGSRRTAEPT TAFESKCRIT VDDDDGVSAS SGADDGSSSS  240
SSPTVEASIH GSTVLLKICC KERRGLLVMI LSELEKQGLS IINTSVVPFT DSCLNITITA  300
KARLALPVYY S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151156ERKRRE
2152157RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539351.1_FGP002
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0997320.0AC099732.2 Oryza sativa Japonica Group chromosome 3 clone OJ1203D03, complete sequence.
GenBankAK2881570.0AK288157.1 Oryza sativa Japonica Group cDNA, clone: J090001A02, full insert sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880159.10.0transcription factor bHLH18
TrEMBLA0A0E0CXI00.0A0A0E0CXI0_9ORYZ; Uncharacterized protein
STRINGOMERI03G08670.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64013149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.17e-30bHLH family protein