PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539366.1_FGP002

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 129aa MW: 14406.3 Da PI: 10.4666

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539366.1_FGP002	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	136	4.6e-42	23	104	95	170
YABBY 95 svssekl....senedeevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++++ + +++ e+p+ p ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl KN539366.1_FGP002 23 NAPAMQMppakPVQQEPELPKNAPasANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 104 222333345557788888998877678*****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.9E-40	16	104	IPR006780	YABBY protein
SuperFamily	SSF47095	1.18E-8	42	97	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	7.2E-5	53	96	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 129 aa Download sequence Send to blast
MEQAASASLS SITGRSSSSC ASNAPAMQMP PAKPVQQEPE LPKNAPASAN RPPEKRQRVP 60 SAYNRFIKDE IQRIKAGNPD ISHREAFSAA AKNWAHFPHI HFGLMPDQGF KKTFKPQDYL 120 RTPYWPIHL

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539366.1_FGP002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274016	0.0	AB274016.1 Oryza sativa Japonica Group OsYABBY4 mRNA for OsYABBY4 protein, complete cds.
GenBank	AK106784	0.0	AK106784.1 Oryza sativa Japonica Group cDNA clone:002-115-H10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015622736.1	4e-81	protein YABBY 4
Swissprot	A2X7Q3	4e-82	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	4e-82	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	A0A0D3F851	9e-80	A0A0D3F851_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9YVL2	9e-80	A0A0D9YVL2_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0CP17	9e-80	A0A0E0CP17_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0GAC6	9e-80	A0A0E0GAC6_ORYNI; Uncharacterized protein
TrEMBL	I1P2J5	9e-80	I1P2J5_ORYGL; Uncharacterized protein
STRING	OGLUM02G26190.1	2e-80	(Oryza glumipatula)
STRING	OMERI02G24350.1	2e-80	(Oryza meridionalis)
STRING	OS02T0643200-01	2e-80	(Oryza sativa)
STRING	ONIVA02G28110.1	2e-80	(Oryza nivara)
STRING	ORGLA02G0220100.1	2e-80	(Oryza glaberrima)
STRING	OBART02G25670.1	2e-80	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	2e-40	YABBY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]