PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539373.1_FGP008

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Nin-like

Protein Properties

Length: 232aa MW: 27334 Da PI: 6.3168

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539373.1_FGP008	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.3	4.7e-26	113	163	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e ++++e +s+yF lpik+AA++L+v+lT+LKr+CR +GI+RWPhRk+ksl KN539373.1_FGP008 113 ERTLTFELVSQYFCLPIKQAAQKLNVGLTLLKRRCRVLGIPRWPHRKVKSL 163 5789*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.269	95	184	IPR003035	RWP-RK domain
Pfam	PF02042	4.5E-22	115	163	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MEKWRFCGGH QFQSYSFHEE ENLFQDWSLD YLLLGEDEPF FTHHFSTSVH SNFVQDELYT 60 LFDGDILSIW GDMKEDAYHK SDKDGGEKEE KLDHEKAMEL QLQRLPSGRQ SGERTLTFEL 120 VSQYFCLPIK QAAQKLNVGL TLLKRRCRVL GIPRWPHRKV KSLETLIKNV QELGMETGQD 180 EDNTRNAVEM LQQTKKLIEK SPDAKLDDWT KMLRQACFKE NYKRRRLLAI EG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	222	226	KRRRL

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539373.1_FGP008

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	1e-180	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015627113.1	1e-170	protein RKD1
Refseq	XP_015627115.1	1e-170	protein RKD1
Swissprot	Q9M9U9	5e-40	RKD1_ARATH; Protein RKD1
TrEMBL	A0A0D9YY63	1e-169	A0A0D9YY63_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0HLA4	1e-169	A0A0E0HLA4_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0NKW9	1e-169	A0A0E0NKW9_ORYRU; Uncharacterized protein
TrEMBL	A2X9K2	1e-169	A2X9K2_ORYSI; Uncharacterized protein
TrEMBL	I1P480	1e-169	I1P480_ORYGL; Uncharacterized protein
STRING	OGLUM02G32960.1	1e-169	(Oryza glumipatula)
STRING	ORUFI02G34010.1	1e-169	(Oryza rufipogon)
STRING	ONIVA06G04700.1	1e-169	(Oryza nivara)
STRING	ORGLA02G0278600.1	1e-169	(Oryza glaberrima)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	1e-42	RWP-RK domain-containing protein