PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539390.1_FGP007
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 157aa    MW: 17070 Da    PI: 4.2244
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539390.1_FGP007genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-101445132
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                       +g+WTteEde+l +++++ G g+W++ ++  g
  KN539390.1_FGP007 14 KGPWTTEEDEKLMEYIQKNGHGSWRALPKLAG 45
                       79************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.0E-13543IPR009057Homeodomain-like
PROSITE profilePS500907.271942IPR017877Myb-like domain
SuperFamilySSF466891.15E-81144IPR009057Homeodomain-like
PfamPF002491.6E-81445IPR001005SANT/Myb domain
CDDcd001673.60E-51646No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MGRSPCCDEN GLKKGPWTTE EDEKLMEYIQ KNGHGSWRAL PKLAGSFLAG QLPNIQMHGS  60
SLFDQPAAII NDTNHNQDYA ASTGEREIIN GATKTTTTTT LLPEGSLPPL ADYPTISNLG  120
DVYSTPSCDG NITEFPLLPD ALFDELMRDY VSPSSSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539390.1_FGP007
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126101e-172CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623220.16e-64transcription factor MYB41
TrEMBLA0A0E0CRN14e-63A0A0E0CRN1_9ORYZ; Uncharacterized protein
STRINGOMERI02G30660.13e-64(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112637132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-24myb domain protein 9