PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KN539393.1_FGP007

Organism

Oryza longistaminata

Taxonomic ID

4528

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 218aa MW: 24530.9 Da PI: 6.1789

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KN539393.1_FGP007	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.9	7.3e-11	175	214	1	40
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 r WT+eE+ l+ + + +G g+Wk I++++ ++Rt+ q+ KN539393.1_FGP007 175 RVVWTEEEHRLFMVGLRVFGRGDWKNISKHLVTTRTAAQL 214 678**********************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.23E-9	172	213	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.2E-8	172	214	IPR009057	Homeodomain-like
PROSITE profile	PS51293	11.568	173	218	IPR017884	SANT domain
TIGRFAMs	TIGR01557	9.4E-8	173	213	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-8	175	214	IPR001005	SANT/Myb domain
CDD	cd00167	4.74E-7	178	216	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MGSIVIEGWT ASEIEEARSL ITSPNNGGEG GDGEGNKQKH CGHIVMELHE WFPWKTIGQV 60 IGLYMKLNAG KPMVMHYLNK SDANNSIGEV DHVSNLANGN PVRLEEHRPM LNNVGLVFDY 120 PLEEMEMENQ TDQEPKMVVE EEVQPKEGLV IKEKEAGVSK IHTNSQHVTP SIKRRVVWTE 180 EEHRLFMVGL RVFGRGDWKN ISKHLVTTRT AAQLIKAS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KN539393.1_FGP007

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP002854	0.0	AP002854.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0014B15.
GenBank	AP014962	0.0	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015642214.1	1e-154	uncharacterized protein LOC107281238
TrEMBL	A0A0E0HPY9	1e-153	A0A0E0HPY9_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0PU55	1e-153	A0A0E0PU55_ORYRU; Uncharacterized protein
TrEMBL	A2Y9V8	1e-153	A2Y9V8_ORYSI; Uncharacterized protein
TrEMBL	Q5SNB9	1e-153	Q5SNB9_ORYSJ; Uncharacterized protein OSJNBa0014B15.24
STRING	ORUFI06G04910.1	1e-153	(Oryza rufipogon)
STRING	ONIVA06G15050.1	1e-153	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16549	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G16350.1	4e-13	MYB_related family protein