PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539401.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 246aa    MW: 25946.7 Da    PI: 7.1103
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539401.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011117139123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +C k F ++     H+r+H
  KN539401.1_FGP001 117 FACRICRKEFDTRKAVDGHMRVH 139
                        78*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-6116139No hitNo description
PfamPF139120.031116142IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.325117144IPR007087Zinc finger, C2H2
SMARTSM003550.01117139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-6173200No hitNo description
PROSITE profilePS501578.954178205IPR007087Zinc finger, C2H2
PfamPF139127.4E-4178201IPR007087Zinc finger, C2H2
SMARTSM003556.3178200IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEGGNSSKGA MEGGHRCRRP NVDDDDQIEE GEICYDCHVS GSETDDDEHH RRAVLPPRDN  60
GDGCAEHKRF RLDNAATAPA PSAGPVLTTS NGSAIVAIAS AAAAAAAAAA TKAREVFACR  120
ICRKEFDTRK AVDGHMRVHR QQSIATPKYN AADNSRVTVG SSGAGADGCH GGADSSKHRC  180
RECGMEWKTG FALGGHMRKH QTKEKVTVNE KEPNVAGKHI SLGPPPSPDL TPAAAELSSQ  240
PLGYLI
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539401.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1453670.0AC145367.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0064J09 map near 50283S, complete sequence.
GenBankAK1109140.0AK110914.1 Oryza sativa Japonica Group cDNA clone:002-173-C05, full insert sequence.
GenBankAP0149670.0AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015616778.11e-93myristoylated alanine-rich C-kinase substrate
TrEMBLQ53KY23e-92Q53KY2_ORYSJ; Os11g0442900 protein
STRINGOS11T0442900-016e-93(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP171081012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.17e-10C2H2 family protein