PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539406.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 1441aa    MW: 157146 Da    PI: 6.5231
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539406.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.27.4e-12240296155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++gr++A+++d  +  +g  rk  + g ++t+++Aa+a++ a++k++g
  KN539406.1_FGP004 240 SQYRGVTRHRWTGRYEAHLWDnSCRkDGqTRKGRQ-GGYDTEDKAARAYDLAALKYWG 296
                        78*******************54445554335555.77***99*************97 PP
2AP245.51.9e-14339390155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  KN539406.1_FGP004 339 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 390
                        57****************988532...5************************997 PP
3HLH34.14.8e-1112991347355
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH    3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55  
                          +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  KN539406.1_FGP004 1299 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 1347
                         58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-9240296IPR001471AP2/ERF domain
CDDcd000182.58E-18240304No hitNo description
SuperFamilySSF541717.85E-14240306IPR016177DNA-binding domain
PROSITE profilePS5103217.662241304IPR001471AP2/ERF domain
SMARTSM003803.5E-21241310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.7E-11241305IPR001471AP2/ERF domain
PRINTSPR003672.2E-5242253IPR001471AP2/ERF domain
CDDcd000181.49E-24339400No hitNo description
PfamPF008472.4E-9339390IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-17339399IPR016177DNA-binding domain
SMARTSM003801.3E-33340404IPR001471AP2/ERF domain
PROSITE profilePS5103219.045340398IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-17340398IPR001471AP2/ERF domain
PRINTSPR003672.2E-5380400IPR001471AP2/ERF domain
Gene3DG3DSA:3.10.20.904.1E-5555630No hitNo description
PROSITE profilePS5018111.405868914IPR001810F-box domain
SuperFamilySSF813832.35E-13868937IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.1E-10871937No hitNo description
PfamPF129378.9E-6873915IPR001810F-box domain
SMARTSM002561.5E-5874914IPR001810F-box domain
SuperFamilySSF474599.16E-1712941362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.30E-1112941351No hitNo description
PROSITE profilePS5088815.79612961346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1712961363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-812991347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-1013021352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1441 aa     Download sequence    Send to blast
MSSPPPDSAT TCNFLFSPPA AQMVAPSPGY YYVGGAYGDG TSTAGVYYSH LPVMPIKSDG  60
SLCIMEGMMP SSSPKLEDFL GCGNGSGHDP ATYYSQGQEA EDAGRAAYQH HQLVPYNYQP  120
LTEAEMLQEA AAAPMEDAMA AAKNFLVTSY GACYGNQEMP QPLSLSMSPG SQSSSCVSAA  180
PQQHQQMAVV AAAAAAGDGQ GSNSNDGGEQ RVGKKRGTGK GGQKQPVHRK SIDTFGQRTS  240
QYRGVTRHRW TGRYEAHLWD NSCRKDGQTR KGRQGGYDTE DKAARAYDLA ALKYWGLSTH  300
INFPLENYRD EIEEMERMTR QEYVAHLRRR SSGFSRGASI YRGVTRHHQH GRWQARIGRV  360
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDIT RYDVDKIMES SSLLPGEAAR  420
KVKAIEAAPE HVPVGRELGA TEEASAATVM GTDWRMVLHG SQQQQAAACT EATADLQKGF  480
MGDAHSALHG IVGFDVESAA ADEIDWGRGE FTAGERCHKA SYIPAPIIPK GFSCRFPRQC  540
FHVPACSFMM AWPVKLPDTA TLSDVKAFLA TKLSAAQPVP AESVRLTLNR SEELLTPDPS  600
ATLPALGLAS GDLLYFTLSP LPSPSPPPQP QPQAQPLPRN PNPDVPSIAG AAGPTKSPVE  660
SGSSSSMPQA LCTNPGLPVT SDPHPPPPDV VMAEAFAAIK SKSSFLVGAM KREMENAGGA  720
DGTVICRLVV ALHAALLDAG FLYANPVGSC LQLPQNWASG SFVPVSMKYT LPELVEALPA  780
VEEGMVAVLN YSLMGNFMMV YGHVPGATSG VRRLCLELPE LAPLLYLDSD EVSTAEEREI  840
HKLWRVLKDD MCLPLMISLC QLNNLSLPPC LMALPGDVKA KVLEFVPGVD LARVQCTCKE  900
LRDLAADDNL WKKKCEMEFN TQGESSRVGR NWKESFYETM STVRFCFDQA FSARTFGCAH  960
EHDSETCVLM IRYMRCMMCK CIYSDQRKDI ILADKYTRGN YMQKPVTQPG RWFILLVFHS  1020
LLCQYIVIGL SLLWYHLVDL VQDAPAAGIH FDCIIPLPIN PYQLLPSAGA CCSTTQASAS  1080
AKDGGNWIAV ASVPWFGLHF TVPTAIDLNS ENFILIHGCD PAGAWLLAVP TILFQDWFPP  1140
LPLRLSIALG LLNFSLWTIF ICIPLPAVLL QAAKGIVSRS ELTSLLRLTL PWTSTSLSFF  1200
LCIMQVCKRG FSFTILPVFP CSNSPDTQLS RNMSIDKCLK GSKRKGSGEG SSSLHSQEET  1260
GEMPQRELSM EHAGEKAGDA DASREEYVHV RAKRGQATNS HSLAERFRRE KINERMKLLQ  1320
DLVPGCNKIT GKAMMLDEII NYVQSLQRQV EFLSMKLSTI SPELNSDLDL QDILCSQDAR  1380
SAFLGCSPQL SNAHPNLYRA AQQCLSPPGL YGSVCVPNPA DVHLARAAHL ASFPQVYIEL  1440
Q
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539406.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1063060.0AK106306.1 Oryza sativa Japonica Group cDNA clone:002-101-C10, full insert sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP94838133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.15e-99AP2 family protein