PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539428.1_FGP004
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 235aa    MW: 25313 Da    PI: 4.7216
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539428.1_FGP004genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.5e-07133167337
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS- CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskK 37 
                        ++h   Er RR++++++f  L  l+P+++  +++K
  KN539428.1_FGP004 133 KMHVLTERERRKEMKNKFKILHALIPNLPEKGGQK 167
                        579999*********************75444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.956130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-6133179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-5133163No hitNo description
PfamPF000101.3E-4133167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-6134164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSQEGPNNLP QGTQETHDHP FTIATNTPLG LTKMGNSDSR KSDENNTSSK PASPVVSSDV  60
VEIKETWENV VAADEEGEGG EDGFASDASE SKSKSSSDEV DYELLDLLAG ASEGCSGGNN  120
NNEVKNFAYA DHKMHVLTER ERRKEMKNKF KILHALIPNL PEKGGQKNLV AGAVSVLERH  180
HIDVVTATVS ASEQGDNLIS LHCHLGPGSS SSQNLTPLDK FKLAMSELML WVISV
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539428.1_FGP004
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0H0X67e-87A0A0E0H0X6_ORYNI; Uncharacterized protein
STRINGONIVA04G10990.11e-87(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20053691
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.11e-10bHLH family protein