PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN539447.1_FGP001
Organism
Oryza longistaminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 102aa    MW: 10847 Da    PI: 9.7603
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN539447.1_FGP001genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.7e-051638123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C++ F++   L  H++ H
  KN539447.1_FGP001 16 YECTFCKRGFTNAQALGGHMNIH 38
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.78E-71542No hitNo description
PfamPF139129.4E-61540IPR007087Zinc finger, C2H2
SMARTSM003550.00971638IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2611643IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-51642IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MDGEGAARRA PAAAYYECTF CKRGFTNAQA LGGHMNIHRK DRGAGGKSQG GGQHHEGGGS  60
GSDIVNAVEN WRFASSFINV LVKNNPFNHP HKKDFSVGSK AC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14451GGKSQGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKN539447.1_FGP001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0043362e-88AP004336.2 Oryza sativa Japonica Group genomic DNA, chromosome 7, PAC clone:P0498D08, complete sequence.
GenBankAP0051682e-88AP005168.3 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0066B06.
GenBankAP0149632e-88AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
GenBankCP0126152e-88CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799920.11e-20zinc finger protein JAGGED-like
TrEMBLA0A2S3GXD62e-19A0A2S3GXD6_9POAL; Uncharacterized protein
TrEMBLA0A2T7ENG22e-19A0A2T7ENG2_9POAL; Uncharacterized protein
TrEMBLA0A3L6QRR22e-19A0A3L6QRR2_PANMI; Putative transcriptional regulator RABBIT EARS
STRINGPavir.Ba02387.1.p3e-20(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63633244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43540.13e-15C2H2 family protein